PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8434_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 334aa    MW: 39178.4 Da    PI: 5.7635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8434_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.86.3e-21201494128
            NAM   4 Gfr..FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    G++  F+Ptd++++ +yL kkv g+  +  + + +++iy+  + w+  k +++ +e+ +yfF+k +kk+++g+r  r+t+ g+W+++ kd++++s 
  Neem_8434_f_2  20 GCKiiFDPTDQQIILDYLLKKVFGNLPPS-DWVIDCNIYSEsKIWK--KYFEErRESTLYFFTKLKKKSEKGSRFDRVTECGTWRSQ-KDTKIYSF 111
                    55444********************9888.7788899987513343..33444145577*************************977.67888887 PP

            NAM  96 ....kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                        +++++g ++ ++f  k+   + +  +W+mheyrl
  Neem_8434_f_2 112 gcdhQRKHIGSRRNFTFVwKKGCDEDKGVRWIMHEYRL 149
                    78778888*********9633444456789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-2414175IPR003441NAC domain
PROSITE profilePS5100526.36619175IPR003441NAC domain
PfamPF023653.3E-1524149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MYQSQAHCQQ SPMQAILPLG CKIIFDPTDQ QIILDYLLKK VFGNLPPSDW VIDCNIYSES  60
KIWKKYFEER RESTLYFFTK LKKKSEKGSR FDRVTECGTW RSQKDTKIYS FGCDHQRKHI  120
GSRRNFTFVW KKGCDEDKGV RWIMHEYRLD GCLLENKETN NNCWDDYVLC RIKRKGKIKE  180
DDEEKVMASR SSNDVMRRFQ ENIMSIVDLS DSVLNTAEMF HIVVSAEEVN IGINGEGLLY  240
SEELDHSNLC LSLKDLEDDY YKVNELQLPV VQVERPVNIV DVQSNTTRDW NTSKDLEKIL  300
SDSTVENLDY NVGITQDELQ DVIVKRPKFS RTVR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2006036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-17NAC domain containing protein 47