PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_842_f_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 222aa MW: 23419 Da PI: 6.0811 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 85 | 7.2e-27 | 26 | 68 | 3 | 45 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGa 45 +++l+cprCdst tkfCyynny+lsqPr+fCk+CrryWt+G a Neem_842_f_6 26 TESLPCPRCDSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGVA 68 57899***********************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-16 | 27 | 66 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-22 | 28 | 66 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 22.517 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPSDATDRKL TRSQNLMSTH PPPKITESLP CPRCDSTSTK FCYYNNYNLS QPRHFCKSCR 60 RYWTQGVAAT ANSSSCSSTM TYEHVPVSAN AVSVMPCGNP EMVSVITTDM NLNESVPGSG 120 SFTNMLNMQV QGQNFLGLGG FHGYGIGSGF EELELGFGGT RSWEISGAGY GGGNAVGAGS 180 SGCNTWQMIN GDDQGGNGGG LVGEDCYTWS GLAISTPGKG LK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00189 | DAP | Transfer from AT1G47655 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM434546 | 9e-37 | AM434546.2 Vitis vinifera contig VV78X101338.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434874.1 | 1e-107 | dof zinc finger protein DOF1.6 | ||||
TrEMBL | V4V7M1 | 1e-106 | V4V7M1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434874.1 | 1e-106 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9465 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 2e-28 | Dof family protein |