PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_833_f_9

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 273aa MW: 31034.6 Da PI: 9.3334

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_833_f_9	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	108	197	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY YA++vGF vr+ + ++s +g++ r++ C+k+g++ + k + e+++r++ r gCka++ vk+ek+gkw+vt+++++HnH+l+ Neem_833_f_9 108 KFYMGYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNPKGTIGPEKKPRPSAREGCKATILVKMEKSGKWVVTRFVKDHNHPLV 197 6********************************************9**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-24	108	197	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MINPKKKKKN SLDGYRSNCK SIVETETEVL GSETPVLQLE RVKNWKVKRV GMRNDFLCLT 60 TLYCRVELDE GVAAADSSVI EKSGESGGDE ILEPYVGMEF ESEDDARKFY MGYARRVGFV 120 VRIMQRRRSG IDGRTLARRL GCNKQGFSPN PKGTIGPEKK PRPSAREGCK ATILVKMEKS 180 GKWVVTRFVK DHNHPLVVTA NGYSTVGDKD KKIEELTLEL ERQEQLCASY REKLLNFMSN 240 VEEQTEELSS KIQVIVDNIR KAESEMLKVS HHR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447971.1	1e-134	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_006492212.1	1e-134	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H5PHQ9	1e-132	A0A2H5PHQ9_CITUN; Uncharacterized protein
TrEMBL	V4UG07	1e-132	V4UG07_9ROSI; Uncharacterized protein
STRING	XP_006492212.1	1e-133	(Citrus sinensis)
STRING	XP_006447971.1	1e-133	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	9e-67	FAR1 family protein