PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_833_f_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 126aa MW: 14538.7 Da PI: 10.6128 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.3 | 3.4e-25 | 11 | 100 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eY+++vGF++r+++ ++s+ ++++ +r++ C+k+g+ + ++ r++r++ r gCka++ vk +++gkw v++++++H+H+l+ Neem_833_f_8 11 EFYAEYSRRVGFTMRIDQCRRSEIDKRVLSRRLSCNKQGFYVKARDVFGPVRKPRTSPREGCKAMMLVKFDESGKWIVSRFVKDHTHPLT 100 6****************************************99999999***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-23 | 11 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MEFDSEAAVK EFYAEYSRRV GFTMRIDQCR RSEIDKRVLS RRLSCNKQGF YVKARDVFGP 60 VRKPRTSPRE GCKAMMLVKF DESGKWIVSR FVKDHTHPLT VSSTRSFPSN SMALAMMTVR 120 PSSDSN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010646072.1 | 3e-58 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_019073552.1 | 6e-58 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
TrEMBL | F6I1X0 | 7e-57 | F6I1X0_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0174g00130.t01 | 1e-57 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-43 | FAR1 family protein |