PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_833_f_14
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 262aa    MW: 29816 Da    PI: 5.1767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_833_f_14genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.81.3e-2693181289
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                    +Y++YAk+vGF +r+ + ++s r+g i++r+f C+keg+  ++kk+ + + r++r+ tr gCka+++v+kek+gkw+vtkle+ H+H+l
  Neem_833_f_14  93 YYDAYAKRVGFVIRVGNCHRSCRDGLIVSRRFLCNKEGFCVNNKKTkRLEVRKRREITREGCKAMIMVRKEKSGKWVVTKLETAHSHPL 181
                    8**************************************98888873567788999*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-2693181IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEYDQLSICV VVNFTASVNG DFGLISDSAE IEPEADIDNK MIEIMAGKDI CMTEGGELID  60
FYDGRELIVN EVDGNAEPYI GMEFESEETA MVYYDAYAKR VGFVIRVGNC HRSCRDGLIV  120
SRRFLCNKEG FCVNNKKTKR LEVRKRREIT REGCKAMIMV RKEKSGKWVV TKLETAHSHP  180
LGIPAGKGRR VTVQARPQGE KDKKIRELLT DLHRANQQLA ECREQLAMVL KDVEQHTDHV  240
TKCIQNIIDN VKEVEEAEDE EL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028119173.11e-125protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLA0A2R6QJP01e-128A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRINGAquca_058_00091.11e-103(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2591323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-53FAR1 family protein