PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_8269_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 444aa MW: 50662 Da PI: 8.1788 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.7 | 3e-29 | 103 | 154 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtp+LH +Fv+ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ Y Neem_8269_f_2 103 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQIY 154 8*************************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 99 | 155 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-13 | 102 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-20 | 103 | 154 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-7 | 104 | 152 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 444 aa Download sequence Send to blast |
MGNDVEEPGT AMTEDLEIQK SERSEEQAEN TSVASSQKCS VSFDLNEEAS SEKDDSLAKV 60 NVELSVEDDE KGTEGSSSNN NVSGEGGNER RSKVRQYVRS KLPRLRWTPD LHLSFVHAVE 120 RLGGQEKATP KLVLQLMNVR GLSIAHVKSH LQIYTCSDFP THFTCPMCLP HQMYRSKKLD 180 ETGQVLSHKY RSIQGRDHIR GIYQPVTSPR QHFRMENGGI VLAKNLLHEN NITRNIFQTP 240 QLSQRPFDFK PKFSRKSDHD VETIRPSSLI GKDHGDNIFL KSNAFHSLGK SPSSNHQIHA 300 IETAIGIGPM RPRRFLEEKR WPPLEMINSR RWKVNASNIL ANENTRSQPQ AHQISTMPMS 360 YCTMSRNDSM FRQFPFNSND SAGKFSSFQP NFEPPFLLEL NQDKMMKEKE WLPDLQLRLS 420 QRVGIDEEKS HCNIQEISTK LSLS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-16 | 104 | 159 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-16 | 104 | 159 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-16 | 104 | 159 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-16 | 104 | 159 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 104 | 159 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449512.2 | 1e-163 | uncharacterized protein LOC18051238 | ||||
TrEMBL | A0A2H5N559 | 1e-161 | A0A2H5N559_CITUN; Uncharacterized protein | ||||
STRING | XP_006467640.1 | 1e-161 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-33 | G2-like family protein |