PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_8170_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 29535.8 Da PI: 6.606 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eIr+p r ++++lg+f t+e+Aa a++ a+++l+g Neem_8170_f_1 110 TYRGVRRRS-SGKWVSEIREP-----RkpTKIWLGTFPTPEMAAIAHDVAALALKG 159 69****888.8*********9.....448************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-10 | 110 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-32 | 110 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 110 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 110 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-29 | 110 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-8 | 111 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.91E-30 | 111 | 169 | No hit | No description |
PRINTS | PR00367 | 8.6E-8 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MSNTKAGLHP NLSKTAVQET TGLHFTTQNS AKSSLCNQIS LSENPSSING FSHHLFQTHH 60 RLPAISRNYN TGAMHYSRPN KTTNPSSSSS GSNASSAAAR GTSAPGRHPT YRGVRRRSSG 120 KWVSEIREPR KPTKIWLGTF PTPEMAAIAH DVAALALKGQ EAELNFPDSA ASLPVPASTS 180 PRDIQAAAAS AAAALGAARD ALSGIETDEA MTDNNVLEPE KQMVNDFVDE DLIFNMPNLL 240 VNMAEGMLLS PPRLDIAGDD AAADFSSGDD QNLWKFP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 98 | 167 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442203.1 | 5e-86 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 1e-54 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A2P5SRB5 | 2e-86 | A0A2P5SRB5_GOSBA; Uncharacterized protein | ||||
STRING | cassava4.1_031718m | 2e-80 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6424 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-41 | ERF family protein |