PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7_f_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 475aa MW: 52231.3 Da PI: 8.9967 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.4 | 3.9e-25 | 125 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+ei+++g H h+ Neem_7_f_8 125 SDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGNVIEIVNKGMHSHD 181 8********************************98.*********************7 PP | |||||||
2 | WRKY | 32.5 | 1.7e-10 | 296 | 314 | 3 | 21 |
-SS-EEEEEEE--TT-SS- CS WRKY 3 DgynWrKYGqKevkgsefp 21 Dgy+WrKYGqK+vkg+++p Neem_7_f_8 296 DGYRWRKYGQKMVKGNPNP 314 9*****************9 PP | |||||||
3 | WRKY | 46.9 | 5.5e-15 | 357 | 394 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +YYrCtsagCpv+k++e++ +++++v+itY+g H+h+ Neem_7_f_8 357 ENYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHD 394 68***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-19 | 119 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-19 | 121 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-23 | 124 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.006 | 125 | 183 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-16 | 126 | 180 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.4E-28 | 279 | 314 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.765 | 289 | 396 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-8 | 290 | 338 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-26 | 294 | 395 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-7 | 296 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-12 | 355 | 396 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-9 | 355 | 393 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.4E-28 | 357 | 396 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MMTALRDSYI DAFPGLPEHD DRIKGFLHWE KVIASHQEVS VSIAAQDAES QAQNKLQSSM 60 CPTSLSELSP TSVTQPISSV PSPTLPGQKL SPIKVNNAAV VEAERQNSSE LKDVSVVHIV 120 KTPVSDGYNW RKYGQKQVKS PKGSRSYYKC TYSDCCAKKI ECSDHSGNVI EIVNKGMHSH 180 DPPRKNYCVR ESRLASSVGP ILGNNVTEQS IRMHNDSDPS TSSKDSIQDA NVVLERKRPN 240 LSENGNVAVK EEHVIEPEPK RRVKKSNIAC TDPLSKPGKK PKFVVHAAGD VGISGDGYRW 300 RKYGQKMVKG NPNPSLSLCC LRFQMTALRR LSWISDAPRC LGIEVTWSLW PFRTFDENYY 360 RCTSAGCPVR KHIETAVDNT SAVIITYKGV HDHDMPVPKK RHGPPSAPLV AAAAPASMNN 420 LQFKKTDAAQ SQMTSTQWSV GKEGELTGAA MDLGGEKAME SARTLLSIGF EIKPC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX236033 | 1e-174 | JX236033.1 Citrus trifoliata WRKY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453624.1 | 0.0 | probable WRKY transcription factor 32 isoform X1 | ||||
Refseq | XP_015384576.1 | 0.0 | probable WRKY transcription factor 32 isoform X1 | ||||
Swissprot | P59583 | 1e-134 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | V4WJB7 | 0.0 | V4WJB7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006453624.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6338 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-127 | WRKY DNA-binding protein 32 |