PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7940_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 183aa MW: 20170.3 Da PI: 4.3286

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7940_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.3e-15	135	180	2	47
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +e++++rr++kNRe+A rsR+RK+a++ eLe v +Le+eN +L Neem_7940_f_1 135 EEDQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLLR 180 689**************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-5	134	181	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.6E-14	135	181	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	136	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-10	138	181	No hit	No description
CDD	cd14707	6.79E-21	138	180	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-14	139	181	No hit	No description
PROSITE pattern	PS00036	0	141	156	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MASSKVMATT STTNTDLPCQ PSICASLSSI LADFQNQDQN PGDPQTLGSM NMDDLLKNIY 60 STPTPEQVEL NGASMTREGG LVSNGINNNV SNDNKSVDDV WKQIVAGVSD QRRGGAGDEE 120 MTLEDFLTKA GAVREEDQKQ RRMIKNRESA ARSRERKQAY TVELESLVTQ LEEENARLLR 180 EEV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389951.1	9e-42	G-box-binding factor 4-like isoform X4
Swissprot	Q0JHF1	1e-18	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	V4SXH0	2e-40	V4SXH0_9ROSI; Uncharacterized protein
STRING	XP_006491892.1	5e-40	(Citrus sinensis)
STRING	XP_006432284.1	6e-41	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16538	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	6e-12	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]