PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7908_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ZF-HD | ||||||||
Protein Properties | Length: 214aa MW: 23526.1 Da PI: 9.6185 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 46.4 | 8.9e-15 | 1 | 31 | 29 | 58 |
ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRreve 58 mps++++ +++++lkCaACgCHRnFHRre+e Neem_7908_f_5 1 MPSPTATaTDPTSLKCAACGCHRNFHRREPE 31 6777777799******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 10.584 | 1 | 29 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-10 | 7 | 30 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-5 | 14 | 32 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.97E-20 | 115 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 122 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.6E-25 | 128 | 185 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MPSPTATATD PTSLKCAACG CHRNFHRREP EDIINTASLS HPTNANTTAT IEYQPHHRHH 60 PPPPPPAQQT QPPASQRSPN SSSPPPISSS YYPSAPHMLL ALSGNLQSAQ ETMISNLNVN 120 VSSNSSPRKR FRTKFSQSQK EKMFQFPERV GWKMQKRDDE MVQEFCNEVG VDRNVLKVWM 180 HNNKNTLAKR DLNGNSGGES AAHVATANGS SSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 129 | 186 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084702.1 | 2e-76 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 2e-46 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1U7ZYG6 | 1e-67 | A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9 | ||||
STRING | XP_010257380.1 | 2e-68 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-41 | homeobox protein 34 |
Publications ? help Back to Top | |||
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