PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7874_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 327aa MW: 35581.6 Da PI: 9.0794 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.7 | 3.4e-40 | 31 | 91 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + Neem_7874_f_1 31 QEQALKCPRCDSLNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 91 5799******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 28 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.5E-34 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.441 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MMSSDNLLAK PVSKDENQNP GNRKTASTRP QEQALKCPRC DSLNTKFCYY NNYSLTQPRH 60 FCKTCRRYWT KGGALRNVPI GGGCRKNKKI KSSSRLSADS KDSGSTSEIG GLKFFHGISP 120 AMDFQLGGLS FPRLNPPPTG ICSQFSSFGD STSPSCFSLD PSASSGNNLM GFNYPLSSVT 180 NSFSGAIQEM GSLNVNSSLA SSIESLSSIN QDLHWRLQQQ RLAMLFGREN QKDSSNVSSV 240 HLESQTQKPQ PILFQNLEIP KPEVSAVGNL RKEGASGEPA TEWFFGNSYA PVTAATPTNS 300 SSHGNDNTSN WNGVQAWGDL HRYSALP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021274371.1 | 0.0 | dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A061DI28 | 0.0 | A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein | ||||
STRING | EOX91892 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 7e-60 | Dof family protein |