PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_783_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family S1Fa-like
Protein Properties Length: 89aa    MW: 10055 Da    PI: 10.4362
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_783_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.42.4e-412489570
          S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                   +eakG+nPGlivllvv glllvflvgny+ly+yaqk+lP rkkkP+skkk+kre+lkqGv++PGe
  Neem_783_f_2 24 DAEAKGFNPGLIVLLVVVGLLLVFLVGNYVLYMYAQKTLPQRKKKPISKKKMKRERLKQGVSAPGE 89
                  68***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046896.0E-412589IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDDEFEFADK VPPSFDRMGK VIKDAEAKGF NPGLIVLLVV VGLLLVFLVG NYVLYMYAQK  60
TLPQRKKKPI SKKKMKRERL KQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.21e-37DNA-binding protein S1FA
RefseqXP_024026346.11e-37DNA-binding protein S1FA
SwissprotP425532e-16S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLB9SGP81e-33B9SGP8_RICCO; DNA-binding protein S1FA, putative
STRINGLus100150734e-37(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769