PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7747_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 281aa MW: 32168.4 Da PI: 8.4105 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.9 | 1e-15 | 207 | 232 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yG+ C+FaHg Neem_7747_f_1 207 WKTELCNKWQETGTCPYGEYCQFAHG 232 8************************8 PP | |||||||
2 | zf-CCCH | 19.7 | 1.5e-06 | 245 | 270 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ Neem_7747_f_1 245 YKTEVCRMVLLGAMCPYGHRCHFRHS 270 9**********88**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-18 | 203 | 239 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-11 | 204 | 238 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-9 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 206 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-12 | 207 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-12 | 240 | 273 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-9 | 240 | 275 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-5 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEKEREASSP SNPKTSTMAT ATPCSSPSPD FSSMYYSIFP PRSSLSPTFL TEDQHRRATE 60 DRLHQARLIL EYQQLCDHYD LCFSRLQAIT GELETLRQEN ADLRLANAGL LKLLTGSFHR 120 QTEEISSGFS PKSMMEPNRF AKIDVWERDS LPKSISVRSN GYVKAKQNNA SSGPSRQRVQ 180 RVHVAADNKR EKEAKAMEME VCNQGTWKTE LCNKWQETGT CPYGEYCQFA HGISELRPVI 240 RHPKYKTEVC RMVLLGAMCP YGHRCHFRHS LTDQEMNQIP R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 207 | 270 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430713.1 | 1e-128 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C9N3 | 2e-74 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | V4S8X0 | 1e-127 | V4S8X0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430713.1 | 1e-128 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10623 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 5e-65 | C3H family protein |