PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7709_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 22360.6 Da PI: 9.0807 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.6 | 4.2e-17 | 112 | 193 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + p +fa+++ + + + +l+d+ gr+W +k+ y+++ g+ ++ltkGW+eF + n + gD++vF+l++ ++ l+v+vf Neem_7709_f_1 112 NYAPATFANKYVSRSVQ--SAKLQDSCGREWPMKI-YWRSTGSagFYLTKGWNEFSEINVIHKGDICVFELIRMEDVLLKVSVFH 193 377999**999666556..59**************.666555558***************************9888889999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-16 | 98 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-14 | 112 | 193 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.75E-14 | 115 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 115 | 195 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-12 | 128 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVVGNSMILE KIVRKFGDEL SAVAKLRVPN GRVGRVLDTF VVFEYIKHST FDLLVFDTTA 60 CEIDYPPTQN DKQNSSEQDE IKNENSVEIL GSTTANKKRT SPVKKKNHKA KNYAPATFAN 120 KYVSRSVQSA KLQDSCGREW PMKIYWRSTG SAGFYLTKGW NEFSEINVIH KGDICVFELI 180 RMEDVLLKVS VFHATIE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23053 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-13 | related to vernalization1 1 |