PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7706_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 323aa    MW: 36560.3 Da    PI: 8.8081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7706_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.7e-1976121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+WT eEd+ll ++v+++G ++W++I++ ++ gR++k+c++rw + 
    Neem_7706_f_1  76 KGPWTLEEDQLLQKLVHRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 121
                      79******************************.***********985 PP
2Myb_DNA-binding61.71.5e-19130172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde++v+a++++G++ W+tIar ++ gRt++ +k++w++ 
    Neem_7706_f_1 130 SFTPEEDEIIVKAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 172
                      69******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.72571122IPR017930Myb domain
SuperFamilySSF466895.88E-3273169IPR009057Homeodomain-like
SMARTSM007171.5E-1675124IPR001005SANT/Myb domain
PfamPF002493.0E-1976121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2577129IPR009057Homeodomain-like
CDDcd001672.04E-1578120No hitNo description
PROSITE profilePS5129426.316123177IPR017930Myb domain
SMARTSM007171.1E-16127175IPR001005SANT/Myb domain
CDDcd001674.82E-13130173No hitNo description
PfamPF002492.2E-16130172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-24130176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDTGHSVPRQ PYYLYRLTGS ISYPQLSPFI NYHNSPSLLS QYLLPLPISK YSVLRFQCLG  60
LGFSIMDRDS VMDRVKGPWT LEEDQLLQKL VHRHGARNWS LISKSIPGRS GKSCRLRWCN  120
QLSPEVEHRS FTPEEDEIIV KAHAKYGNKW ATIARLLNGR TDNAIKNHWN STLKRKYLTA  180
GMVDDDNNDV NEREKKRSAV SHSGFSSSPS GSDVSDSGLH DRVFEPESHS NVYDLFGVST  240
DLSLGLPVTA SSELKKRDSS RAAVVEEISK RESSECNKMF VTPSFGPEFL AVMQEMIKKE  300
VRDYMEEAVR NSGIKRIGIS KID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-40751763104C-Myb DNA-Binding Domain
1msf_C3e-40751763104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487005.11e-130transcription factor MYB73-like
RefseqXP_024957676.11e-130transcription factor MYB73-like
SwissprotO231602e-74MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2H5QPS01e-128A0A2H5QPS0_CITUN; Uncharacterized protein
STRINGXP_006487005.11e-129(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-63myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]