PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7694_f_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 357aa MW: 39690.5 Da PI: 8.631 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.7e-14 | 19 | 93 | 25 | 97 |
TT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 25 eh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ ++kk+ ++t++l+ +sg +W v + + +++ ++ GW eFvk + L+e+D++ Fk++g+s f v +f Neem_7694_f_6 19 AIpekvvkNLKKKLPVTVSLKGPSGFTWVVGI--TTRDNILYFCHGWPEFVKNHFLQENDILFFKYNGDSLF--DVLMF 93 4444444456677*******************..9999999*************************998877..56555 PP | |||||||
2 | B3 | 33.4 | 8.2e-11 | 260 | 338 | 18 | 97 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvf 97 +p +++h +++ +++ ++ ++W +++++k +++ l++GWk+F+ +n+L+e D++vF d g++ l+v++f Neem_7694_f_6 260 IPAGWMTKHlT-LENQ--DVI-LRLNEKTWVTRFQFCKPRCSGGLSGGWKNFAVDNNLDEFDVCVFNPDitGTKPVFLNVSIF 338 77777777742.3233..344.44677*********99999999***********************5422443333566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.6E-4 | 6 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-17 | 19 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-16 | 19 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.956 | 20 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-11 | 20 | 88 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.55E-12 | 33 | 94 | No hit | No description |
PROSITE profile | PS50863 | 9.093 | 243 | 341 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-14 | 248 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.31E-14 | 249 | 339 | No hit | No description |
SMART | SM01019 | 0.002 | 250 | 341 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.06E-11 | 250 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.8E-9 | 259 | 338 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAGDICFSPL KLPIKLLEAI PEKVVKNLKK KLPVTVSLKG PSGFTWVVGI TTRDNILYFC 60 HGWPEFVKNH FLQENDILFF KYNGDSLFDV LMFDGQSKCE KAASYFVRKC GHTDHDGEYQ 120 TKRKIGENSV EVIPTSPQCD VGGASPEKTD DDDINKTPAG QPVVSQASSK RVRRVNSSVK 180 PVHTRRSLRS KELCTSFVEN EKAKPVAEPT SFIGDVASSP HYASNRRPVT EDEKKNAMLL 240 AQAALTADSF TVVMRPTHAI PAGWMTKHLT LENQDVILRL NEKTWVTRFQ FCKPRCSGGL 300 SGGWKNFAVD NNLDEFDVCV FNPDITGTKP VFLNVSIFRV VNDVSPLVQV APASLKL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434884.1 | 1e-149 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024038869.1 | 1e-149 | B3 domain-containing protein REM16 | ||||
Refseq | XP_024038870.1 | 1e-149 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2H5NGY0 | 1e-149 | A0A2H5NGY0_CITUN; Uncharacterized protein | ||||
STRING | XP_006434884.1 | 1e-149 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-52 | B3 family protein |