PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7680_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 113aa MW: 13126.8 Da PI: 9.6595 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.4 | 5.5e-27 | 7 | 102 | 29 | 128 |
NAM 29 eleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 ++ ++++ev+i+k+eP+dLp+ + e++ wyfF k+ ++kr++r+t +g+Wk tgkd+ ++e++g k+ Lvfy+gra +g kt+Wv Neem_7680_f_1 7 PV-HTVAEVNICKFEPSDLPQlsPLPPEDQVWYFFNAPVYKNVRSKRTERTTGTGFWKVTGKDR-----GKEEIGFKRNLVFYSGRAANGIKTNWV 96 55.5699************95334445899********************************87.....5667*********************** PP NAM 123 mheyrl 128 hey+ Neem_7680_f_1 97 THEYHS 102 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.042 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-27 | 2 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-13 | 25 | 101 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MRGLDFPVHT VAEVNICKFE PSDLPQLSPL PPEDQVWYFF NAPVYKNVRS KRTERTTGTG 60 FWKVTGKDRG KEEIGFKRNL VFYSGRAANG IKTNWVTHEY HSNNATSYQF YVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-19 | 3 | 101 | 39 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043359.1 | 1e-43 | NAC domain-containing protein 45-like | ||||
Refseq | XP_024948387.1 | 6e-42 | NAC domain-containing protein 4-like isoform X2 | ||||
TrEMBL | A0A067HF96 | 1e-40 | A0A067HF96_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A1S8ADV1 | 5e-40 | A0A1S8ADV1_CITLI; NAC domain containing protein (Fragment) | ||||
STRING | XP_006491403.1 | 2e-40 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17987 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 4e-21 | NAC domain containing protein 69 |