PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_762_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 182aa MW: 20918.2 Da PI: 8.2063 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.2e-09 | 126 | 159 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ LA+++gL++rq+ +WF N+R ++ Neem_762_f_1 126 WPYPTEADKLALAESTGLDQRQINNWFINQRKRH 159 59*****************************885 PP | |||||||
2 | ELK | 38 | 3.4e-13 | 79 | 100 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKY+gy+++Lk+EFs Neem_762_f_1 79 ELKDKLLRKYGGYISTLKHEFS 100 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 5.8E-11 | 79 | 100 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.772 | 79 | 99 | IPR005539 | ELK domain |
SMART | SM01188 | 1.2E-7 | 79 | 100 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.795 | 99 | 162 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-20 | 100 | 176 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.8E-13 | 101 | 166 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-28 | 104 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.04E-13 | 108 | 163 | No hit | No description |
Pfam | PF05920 | 6.0E-17 | 119 | 158 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MVESLGKHLG ISLRLSLSVL EADYFCLYKG LLVAEMAVLI LEIFLALVGD EAAGSSEEDL 60 SGGETQVPEC FRAPPVEREL KDKLLRKYGG YISTLKHEFS KKKKKGKLPR EARQILLDWW 120 NLHFKWPYPT EADKLALAES TGLDQRQINN WFINQRKRHW KPSENMQFTL MDSLYGPIFM 180 NG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028068158.1 | 2e-70 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 2e-56 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A067FQF2 | 2e-69 | A0A067FQF2_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006477546.1 | 5e-70 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-58 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|