PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7557_f_9

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 352aa MW: 39692.6 Da PI: 8.906

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7557_f_9	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.2	4.5e-29	62	118	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYR 54 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ +YR Neem_7557_f_9 62 PRLRWTPDLHLCFVQAVEKLGGQERATPKLVLQLMNIKGLSIAHVKSHLQarcsMYR 118 8*************************************************5555566 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-27	58	119	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.537	58	122	IPR017930	Myb domain
SuperFamily	SSF46689	6.63E-13	60	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-20	62	112	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	63	111	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MTKKREISNG LEMNLFGRDE DEKGDDESKT KTSASSSNSV VEDGEKKASS SGVRPYVRSK 60 VPRLRWTPDL HLCFVQAVEK LGGQERATPK LVLQLMNIKG LSIAHVKSHL QARCSMYRSK 120 KIDDHGQVIN SRGHLMRSSD HFSHNLWHHS MLRGINQRIG SNFSDASWIG HGNSMLRPHM 180 NIGSRACFGE PLLARSIYGE IGSNIRNEAL YTRRNLAFSE QRIGRTSERH EDCLSYNCDA 240 FQTQSSSTVP SLWHGKERTK CCNYTPNPAN PNSKWMIDGL EEQSTGKRKA LEHDDLDLSL 300 SLGSKVRKEE VRRKLLGDEE EVESILLLSL SSSLTREICS TNLQRHSEAN NS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MTKKREISNG LEMNLFGRDE DEKGDDESKT KTSASSSNSV VEDGEKKASS SGVRPYVRSK  60
VPRLRWTPDL HLCFVQAVEK LGGQERATPK LVLQLMNIKG LSIAHVKSHL QARCSMYRSK  120
KIDDHGQVIN SRGHLMRSSD HFSHNLWHHS MLRGINQRIG SNFSDASWIG HGNSMLRPHM  180
NIGSRACFGE PLLARSIYGE IGSNIRNEAL YTRRNLAFSE QRIGRTSERH EDCLSYNCDA  240
FQTQSSSTVP SLWHGKERTK CCNYTPNPAN PNSKWMIDGL EEQSTGKRKA LEHDDLDLSL  300
SLGSKVRKEE VRRKLLGDEE EVESILLLSL SSSLTREICS TNLQRHSEAN NS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-16	63	118	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015388811.1	1e-137	uncharacterized protein LOC107178351
TrEMBL	V4SHP8	1e-136	V4SHP8_9ROSI; Uncharacterized protein
STRING	XP_006425115.1	1e-137	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-44	G2-like family protein