PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7557_f_5

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 543aa MW: 60963.4 Da PI: 4.5622

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7557_f_5	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	131.3	1e-40	170	541	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL + +a++ +++ l++++ rl+e a p g +++R+a y+ +A ++++ s++s s++ aa+++f++++P+ +f+h+t Neem_7557_f_5 170 LHLLKAYGDAMELEQKDLTNEIARRLKEKACPIGATLERVAYYLIQAFNKQVDY----------LSQES---SKNYEAAFRAFYQIFPYGRFAHFT 252 6888889999999*************************************98..........23333...566678999*********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrle 187 aN+ lea+ ++ vHi+Dfdi++G+QWp+L++aL R g+ +++T ++ +e++ +k++ +et+++L + A+ gv++ + + ++ Neem_7557_f_5 253 ANSVTLEAIPEDaGIVHIVDFDIGKGVQWPPLIEALGRR--GKSLVQLTSIKWEEEDsgcipHKQSFKETKKKLDEHARISGVRLLLEEM---DMG 343 *****8876899******************9..6779***9998899**********************99997...556 PP GRAS 188 dleleeLrvkp....gEalaVnlvlqlhrll.............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +l e+ ++k+ +E l+ n+ l ++ +vs++ +++e+ + k++ v q + +s++F f l a Neem_7557_f_5 344 SLVSEMKKTKKrggrNEWLVFNCKAGLPHMGrvrnirhvieflkVATVSVNYPTKEFSGTCKGIITVGNVSGVQKLM-DSGDFGSFFEGRLIQLQA 438 664555555556677***********99999999999998777777778888888888876655555555443.688999999999999* PP GRAS 267 lfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvl 360 +f+s+++++p + e+r+ +E +++++++++ +++e ++l+e G+k+ +ls ++ +ak l+r+ +s r e++++++l Neem_7557_f_5 439 FFESVQKNFPCHLkEARTAIECLFMAPQVSSLAGFKKREG------TTIEGRALSEIGLKAWRLSPDTILEAKELVREGESPFwVRTRENENQMIL 528 *******98876999*********9988888872......2233589*********************9955215555999* PP GRAS 361 gWkdrpLvsvSaW 373 g ++ +Lv vS+W Neem_7557_f_5 529 GYMGTALVEVSSW 541 *********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.293	143	521	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-38	170	541	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MMQVQFLQSL PDYSSIDSPL EEIGIYFADR DAQVGSFEFS SSSMSTEDFS NVSSCVLFAL 60 PFYVDDDSQT FPNYGEESPV MFPMEQCFPI LEEVDTPLSD QFMVDELQDL CECMVSGSGA 120 SSQQICAEHD TTSLILSPVS IEQSIDISSV QTSLVFPSED MEVDDQLSLL HLLKAYGDAM 180 ELEQKDLTNE IARRLKEKAC PIGATLERVA YYLIQAFNKQ VDYLSQESSK NYEAAFRAFY 240 QIFPYGRFAH FTANSVTLEA IPEDAGIVHI VDFDIGKGVQ WPPLIEALGR RGKSLVQLTS 300 IKWEEEDSGC IPHKQSFKET KKKLDEHARI SGVRLLLEEM DMGSLVSEMK KTKKRGGRNE 360 WLVFNCKAGL PHMGRVRNIR HVIEFLKVAT VSVNYPTKEF SGTCKGIITV GNVSGVQKLM 420 DSGDFGSFFE GRLIQLQAFF ESVQKNFPCH LKEARTAIEC LFMAPQVSSL AGFKKREGTT 480 IEGRALSEIG LKAWRLSPDT ILEAKELVRE GESPFWVRTR ENENQMILGY MGTALVEVSS 540 WIL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MMQVQFLQSL PDYSSIDSPL EEIGIYFADR DAQVGSFEFS SSSMSTEDFS NVSSCVLFAL  60
PFYVDDDSQT FPNYGEESPV MFPMEQCFPI LEEVDTPLSD QFMVDELQDL CECMVSGSGA  120
SSQQICAEHD TTSLILSPVS IEQSIDISSV QTSLVFPSED MEVDDQLSLL HLLKAYGDAM  180
ELEQKDLTNE IARRLKEKAC PIGATLERVA YYLIQAFNKQ VDYLSQESSK NYEAAFRAFY  240
QIFPYGRFAH FTANSVTLEA IPEDAGIVHI VDFDIGKGVQ WPPLIEALGR RGKSLVQLTS  300
IKWEEEDSGC IPHKQSFKET KKKLDEHARI SGVRLLLEEM DMGSLVSEMK KTKKRGGRNE  360
WLVFNCKAGL PHMGRVRNIR HVIEFLKVAT VSVNYPTKEF SGTCKGIITV GNVSGVQKLM  420
DSGDFGSFFE GRLIQLQAFF ESVQKNFPCH LKEARTAIEC LFMAPQVSSL AGFKKREGTT  480
IEGRALSEIG LKAWRLSPDT ILEAKELVRE GESPFWVRTR ENENQMILGY MGTALVEVSS  540
WIL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982609.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein
TrEMBL	A0A061GZ26	0.0	A0A061GZ26_THECC; GRAS family transcription factor, putative
STRING	EOY34567	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19272	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	5e-17	RGA-like protein 3