PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7513_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 357aa MW: 40723.9 Da PI: 8.2804

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7513_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.6	4.5e-31	179	233	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v+ LGG+e+AtPk il+lm+++gLt+ hvkSHLQkYR+ Neem_7513_f_4 179 KTRIRWTEDLHNRFVECVDLLGGAERATPKGILKLMDIDGLTIFHVKSHLQKYRI 233 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.709	176	236	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	177	233	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-27	178	234	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-24	179	233	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-7	183	232	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-19	265	312	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDTQERKIQE KNYTYISSDR QQRWNKGIWF QSQFPKLNPG SSNGSGNIIS SNFGLPTSGF 60 YSADNCMDFP LGHCNIIDGL PAYSQNDFKG FHLIQSSAAK FQLQDHQIPN FSAKSHLDCY 120 RNSPGSVLSF MQKPAEESES NLMNQRQNYI PKPSSSYLQS QRQQPTNACF VPAAAITSKT 180 RIRWTEDLHN RFVECVDLLG GAERATPKGI LKLMDIDGLT IFHVKSHLQK YRIARHIPES 240 TEGKSKSERT TDINAIVRLD PKTGMQLVET LRLQLDVQKR LHEQLEVQRN LQLQIEEQGK 300 RLKKMLEQQL KTKESLINDT HDLDNTLQDT PPNDVCTFNI QGFKDTQLYP SNNVVCS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDTQERKIQE KNYTYISSDR QQRWNKGIWF QSQFPKLNPG SSNGSGNIIS SNFGLPTSGF  60
YSADNCMDFP LGHCNIIDGL PAYSQNDFKG FHLIQSSAAK FQLQDHQIPN FSAKSHLDCY  120
RNSPGSVLSF MQKPAEESES NLMNQRQNYI PKPSSSYLQS QRQQPTNACF VPAAAITSKT  180
RIRWTEDLHN RFVECVDLLG GAERATPKGI LKLMDIDGLT IFHVKSHLQK YRIARHIPES  240
TEGKSKSERT TDINAIVRLD PKTGMQLVET LRLQLDVQKR LHEQLEVQRN LQLQIEEQGK  300
RLKKMLEQQL KTKESLINDT HDLDNTLQDT PPNDVCTFNI QGFKDTQLYP SNNVVCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-24	179	236	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-24	179	236	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-24	179	236	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-24	179	236	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-24	179	236	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387141.2	1e-117	myb family transcription factor PHL5-like
TrEMBL	A0A2H5NAE0	1e-116	A0A2H5NAE0_CITUN; Uncharacterized protein
STRING	XP_006483673.1	1e-117	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-63	G2-like family protein