PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7476_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 90aa    MW: 10306.8 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7476_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.5e-0721571854
                   HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   +  ++Lr+llP+ +   + +K+s + +L+++++YI+sL
  Neem_7476_f_8 21 ELVSKLRQLLPEiR-DRRPEKVSASKVLQETCNYIRSL 57
                   56689*******76.67777899999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.172357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-8375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-91776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-42157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRRSRQSG VSRISDDQII ELVSKLRQLL PEIRDRRPEK VSASKVLQET CNYIRSLHRE  60
VDDLSERLSQ LLSTIDADSP EAAIIRSLIM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482579.12e-53transcription factor PRE5
SwissprotQ9LJX15e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2H5QB496e-52A0A2H5QB49_CITUN; Uncharacterized protein
STRINGXP_006482579.19e-53(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-37bHLH family protein