PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7448_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 404aa MW: 45676.1 Da PI: 9.6064

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7448_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.3	8.2e-29	212	261	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Neem_7448_f_1 212 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 261 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-13	209	262	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-25	210	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-21	212	262	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-6	213	262	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTWRRTEE EMDLGFWKRT LDSRNTISSM AKPDTGFELS 60 LSNPRVSESN STQFHLLQNS SNCNGNVFHS FQQNQYPAAL HHQHHQNQLH NHSPVLYHQQ 120 QQQQQGLSQE LGFLRPIRGI PVYQNPHPHH PASPSFPFPH HQQPLDSSLT ASSPSLVTNN 180 TSTSSLSSFQ SQGLMRSRFM SRFPAKRSMR APRMRWTTTL HARFVHAVEL LGGHERATPK 240 SVLELMDVKD LTLAHVKSHL QLVLRYKYYT PAVLMKLIMY RTVKTTDRAA ASSGQSDAFE 300 NGSSGDTSED MMFDIQQPRR PELSIQQGRP NAHQEKEYHG LWSNSSREAW LHGKSKDSAG 360 NLPSLEEMDP KFLSYEGISD VSSPNVTGTS PKKPNLEFTL GRPH

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTWRRTEE EMDLGFWKRT LDSRNTISSM AKPDTGFELS  60
LSNPRVSESN STQFHLLQNS SNCNGNVFHS FQQNQYPAAL HHQHHQNQLH NHSPVLYHQQ  120
QQQQQGLSQE LGFLRPIRGI PVYQNPHPHH PASPSFPFPH HQQPLDSSLT ASSPSLVTNN  180
TSTSSLSSFQ SQGLMRSRFM SRFPAKRSMR APRMRWTTTL HARFVHAVEL LGGHERATPK  240
SVLELMDVKD LTLAHVKSHL QLVLRYKYYT PAVLMKLIMY RTVKTTDRAA ASSGQSDAFE  300
NGSSGDTSED MMFDIQQPRR PELSIQQGRP NAHQEKEYHG LWSNSSREAW LHGKSKDSAG  360
NLPSLEEMDP KFLSYEGISD VSSPNVTGTS PKKPNLEFTL GRPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	213	268	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	213	268	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	213	268	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	213	268	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	213	261	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM483931	1e-61	AM483931.2 Vitis vinifera contig VV78X206734.9, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021293487.1	0.0	LOW QUALITY PROTEIN: probable transcription factor KAN2
Swissprot	Q9C616	2e-93	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A061G740	0.0	A0A061G740_THECC; Homeodomain-like superfamily protein isoform 1
STRING	EOY25194	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	6e-92	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]