PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7405_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 474aa    MW: 52561.2 Da    PI: 6.0872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7405_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19229279256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Neem_7405_f_3 229 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 279
                    59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.56E-33228288No hitNo description
PROSITE profilePS5103222.932229286IPR001471AP2/ERF domain
SMARTSM003802.7E-40229292IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22229287IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-32229287IPR001471AP2/ERF domain
PRINTSPR003671.0E-10230241IPR001471AP2/ERF domain
PfamPF008472.6E-12230279IPR001471AP2/ERF domain
PRINTSPR003671.0E-10252268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAAAKNSGKS RKGVDETTEK MSTSQDWEID KGKDLDFASF ERRQQWRPVF DEASMSQRPL  60
KKIRSPERQN PVQSSSSSVY QVPSFSVTPS SASPSASSLT LGLPSSLSLP SSRLVFPFAF  120
DAPQQAMKFP QQFGTSQTSM PIFRPPIQPT QNQQQMISFS PQQQQQGFSY PPFFAGESML  180
PHQHQQQLLQ YWSDALNLSP RGRMMMNRFG TEGRPLFRPQ VQPLNTTKLY RGVRQRHWGK  240
WVAEIRLPRN RTRLWLGTFD TAEDAALAYD REAFKLRGEN ARLNFPELFL NKDKPVSTAP  300
DSNVSSPATP HESSSSMPSR FLNQAQQAQD SLKSQAMSTE RMPPPPPPQP QGDNPDSDSG  360
LGSSEATASD EVQAVAEGSG SGEGASGSQE LVWGDMAEAW FNAIPAGWGP GSPVWDDLDA  420
TNNLLMPSNL PFVNPNQQEF HDSDRQRQQD NSGSAGSSSS SSCPMKPFFW KDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20228286160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972100.10.0PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A061E4170.0A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX993820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-49ERF family protein