PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7387_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ARR-B

Protein Properties

Length: 549aa MW: 61780.8 Da PI: 6.2708

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7387_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	71.4	1.3e-22	193	246	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+l Wt+eLH+rF++a+ L G++ A Pk+il+ m+v+gL e++ SHLQkYRl Neem_7387_f_4 193 KPKLIWTHELHNRFLQAIGVL-GIDGAHPKKILQYMNVPGLKKENISSHLQKYRL 246 79*****************.******************************8 PP
2	Response_reg	46.9	1.5e-16	24	132	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+vd + + + +l ++l gy +v++a+ +++al +++e++ +l+l +p+md +ell++ e + klpi++++a ++e+d+l l Ga Neem_7387_f_4 24 VLLVDGDSTCLAILSKMLHWFGY-KVNTAKRATDALCIIQEREgeLNLLLAEAHLPDMDKYELLETVGETS-KLPIVIMSADDNENDMLGGLFKGA 117 89*******************.***********999989******************8877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +l+Kp +++++ + Neem_7387_f_4 118 AFYLVKPLSMNDIKN 132 *******999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.1E-24	21	170	No hit	No description
SMART	SM00448	5.0E-13	22	134	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	1.42E-21	22	137	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	28.51	23	138	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	3.7E-12	24	132	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.30E-14	25	138	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.5E-24	191	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-16	191	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-19	193	246	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MSSKKAISVE SGGNALLLPM SVSVLLVDGD STCLAILSKM LHWFGYKVNT AKRATDALCI 60 IQEREGELNL LLAEAHLPDM DKYELLETVG ETSKLPIVIM SADDNENDML GGLFKGAAFY 120 LVKPLSMNDI KNLWQFAFIK KTDAMVTAER LSSLSSDDTD DQMLPNKGKD AKRKKEMDKN 180 QKEDNDDYSV QKKPKLIWTH ELHNRFLQAI GVLGIDGAHP KKILQYMNVP GLKKENISSH 240 LQKYRLSLKR EQDTVETTLN PDSSESHVLL CNLSSTVNVL GSLFELSEMQ SITTSCQPEF 300 RSQEQKNANS CMSMHSVGSS CALNHVVPSC NAISDCRHGQ LAPTRNQEPA RQLVPTCSGY 360 AGIRINNNGK LADFHQMLDF NREEFLEGKM ASSNNVDSGL EGSVQWPSSL TQEEEEKGQQ 420 QQHLFVPKPS TQDHGEHDIN SAERVGIDEY FDTTKVSTQL FIDENFHDLC TQGCEIPCWH 480 QCFPENQIQP LRSRRKRFID CSCFPVSESY EAHSGNSKRR RRRVLISKRT ASRFLLNNID 540 DRCVVNQDL

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MSSKKAISVE SGGNALLLPM SVSVLLVDGD STCLAILSKM LHWFGYKVNT AKRATDALCI  60
IQEREGELNL LLAEAHLPDM DKYELLETVG ETSKLPIVIM SADDNENDML GGLFKGAAFY  120
LVKPLSMNDI KNLWQFAFIK KTDAMVTAER LSSLSSDDTD DQMLPNKGKD AKRKKEMDKN  180
QKEDNDDYSV QKKPKLIWTH ELHNRFLQAI GVLGIDGAHP KKILQYMNVP GLKKENISSH  240
LQKYRLSLKR EQDTVETTLN PDSSESHVLL CNLSSTVNVL GSLFELSEMQ SITTSCQPEF  300
RSQEQKNANS CMSMHSVGSS CALNHVVPSC NAISDCRHGQ LAPTRNQEPA RQLVPTCSGY  360
AGIRINNNGK LADFHQMLDF NREEFLEGKM ASSNNVDSGL EGSVQWPSSL TQEEEEKGQQ  420
QQHLFVPKPS TQDHGEHDIN SAERVGIDEY FDTTKVSTQL FIDENFHDLC TQGCEIPCWH  480
QCFPENQIQP LRSRRKRFID CSCFPVSESY EAHSGNSKRR RRRVLISKRT ASRFLLNNID  540
DRCVVNQDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	3e-19	189	250	1	62	ARR10-B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	517	522	KRRRRR
2	517	523	KRRRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445166.2	0.0	two-component response regulator ARR2 isoform X1
TrEMBL	A0A2H5NPH3	0.0	A0A2H5NPH3_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006445166.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17210	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	8e-50	response regulator 2