PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7271_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YC

Protein Properties

Length: 274aa MW: 30152.9 Da PI: 6.0247

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7271_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.8	4.9e-56	40	144	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflv Neem_7271_f_1 40 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLV 135 89***998899******************************************************************************* PP NF-YC 94 divprdelk 102 divprde+k Neem_7271_f_1 136 DIVPRDEIK 144 ****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.54E-34	23	134	IPR009072	Histone-fold
Pfam	PF00808	2.1E-20	62	125	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.4E-37	63	140	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MENNQQAQSS SYPPQPPSAA AAAAAAAAPY HHLIQQQQQQ LQMFWSYQRQ EIEQVNDFKN 60 HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL TIRSWLHAEE NKRRTLQKND 120 IAAAITRTDI FDFLVDIVPR DEIKDEASGL GGMVGATASG VPYYYPPIGQ PTGAPGPGGM 180 MIGRPAVDPT GVYVQPPSQA WQSVWQTAGT GDDGSYGSGG SGGTSQSRWP RLDLGHEAFL 240 STWWIWAPQG RDIMKEIGQF SNSLKSFYTG KQLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-54	48	140	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022736089.1	1e-126	nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-112	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A067JFC2	1e-122	A0A067JFC2_JATCU; Uncharacterized protein
STRING	XP_006493208.1	1e-119	(Citrus sinensis)
STRING	Gorai.001G058500.1	1e-119	(Gossypium raimondii)
STRING	XP_006436849.1	1e-119	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-108	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]