PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7256_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 828aa MW: 92383.6 Da PI: 6.0598 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.5 | 1.5e-10 | 217 | 260 | 54 | 99 |
EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++r++lt+GW+ Fv++++L +gD ++F + +++el+v+v+r+ Neem_7256_f_2 217 SQPRRHLLTTGWSVFVSSKKLAAGDAFIFL--RGENGELRVGVRRH 260 57899*************************..449999******96 PP | |||||||
2 | Auxin_resp | 111.6 | 7.9e-37 | 285 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+++Y+Pr+s+seF+v+v+k+++a k+k++vGmRfkm fe+e+++err+sGt+vgv d +++ Wp+S+WrsLk Neem_7256_f_2 285 ASHAIATGTLFSIFYKPRTSQSEFIVSVSKYLEAKKHKLAVGMRFKMTFEGEEVPERRFSGTIVGVGDNKTLAWPDSEWRSLK 367 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-24 | 118 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-36 | 126 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.57E-14 | 127 | 259 | No hit | No description |
PROSITE profile | PS50863 | 9.404 | 129 | 261 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-7 | 129 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-8 | 217 | 260 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.89E-12 | 218 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 1.4E-34 | 285 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.5E-7 | 579 | 622 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 28.248 | 586 | 679 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.19E-12 | 588 | 664 | No hit | No description |
Pfam | PF02309 | 8.3E-7 | 631 | 676 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 828 aa Download sequence Send to blast |
MAYAAAPLNH SSGGPRSGGA NDALYRELWH ACAGPLVSLP REGERVYYFP QGHMEQLEAS 60 MHQGLEQQMP SFNLPSKILC KVVHVQRRAE TETDEVYAQI TLLPEPDQSE VTSPDPPLPE 120 LEKCTVHSFC KTLTASDTST HGGFSVLRRH ADDCLPPLDM SQQPPWQELV AIDLHGNEWR 180 FRHIFRVVNL RQFFWSLGIF ESKLVLGLIL PVLLVASQPR RHLLTTGWSV FVSSKKLAAG 240 DAFIFLRGEN GELRVGVRRH MRQQTNMPSS VISSHSMHLG VLATASHAIA TGTLFSIFYK 300 PRTSQSEFIV SVSKYLEAKK HKLAVGMRFK MTFEGEEVPE RRFSGTIVGV GDNKTLAWPD 360 SEWRSLKVQW DEPSSILRPE RVSPWELEPL VANSTTSTAQ PAQRNKRARP PVLPSQAPDL 420 SVLGMWKSPV DSAAFPYCDS PHGRDLYPSP KLSTAAKGNP LGFSGTNSQP AVSSNSMYWS 480 NRVENLTESF APVVNKECGE RRPVSGNTYR LFGIQLVDNS NIEEASPAFT MSGTMGDDRP 540 IPSLDADSDQ HSEPSNINRS DVPSVSCDAE KSSLRSPQES QSRQIRSCTK VQMQGIAVGR 600 AVDLARFDCY EDLLKKLEEM FDIEGELCGS SKKWQVVYTD DEDDMMMVGD DPWHEFCSMV 660 RRIYIYTAEE VKRLSPKTKL PVNEEVKPAK PDVDTAINTE DRSSPTLPSA PPLPPWLEYQ 720 QTLDAVFAAE SVHPGPDLAH AVEPQFSLPE IVVDTASVNP AMLPVSDNSS ISYQQYMDPN 780 PVYGLPVVQT TRRERLSGFF GIVFKFGTSL FRCFCPCFHI REAYEKMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 6 | 396 | 2 | 361 | Auxin response factor 1 |
4ldw_A | 0.0 | 6 | 396 | 2 | 361 | Auxin response factor 1 |
4ldw_B | 0.0 | 6 | 396 | 2 | 361 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX445413 | 3e-63 | JX445413.1 UNVERIFIED: Toona ciliata clone contig 60403 chloroplast sequence. | |||
GenBank | JX445420 | 3e-63 | JX445420.1 UNVERIFIED: Toona ciliata clone contig 16 chloroplast sequence. | |||
GenBank | JX445454 | 3e-63 | JX445454.1 UNVERIFIED: Toona ciliata clone contig 00004 chloroplast sequence. | |||
GenBank | JX445464 | 3e-63 | JX445464.1 UNVERIFIED: Toona ciliata clone contig 119 chloroplast sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431443.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_024039738.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_024039739.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | V4SAY2 | 0.0 | V4SAY2_9ROSI; Auxin response factor | ||||
STRING | XP_006431443.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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