PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7230_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 604aa    MW: 68645.9 Da    PI: 8.2394
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7230_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.94e-2960156291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k        + + +r+ra+tr+gCka l+vk +++g w+v+ +++eHnH+l+
  Neem_7230_f_2  60 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRIDRDKPtsagpaaDGRVKRPRAQTRVGCKALLVVKIQDSGSWVVSLFVKEHNHDLV 155
                    9*****************************************9999999**99999999***********************************98 PP

           FAR1  91 p 91 
                    p
  Neem_7230_f_2 156 P 156
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2760156IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.806382418IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-9390416IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-8393420IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEVIDMEMGM SSVGDESIEI YDGDVIQHPT DFSIIQGLAD INLEPYEGMQ FESEEAAKAF  60
YNSYARRVGF STRVSMSRRS RRDGAIIQRS FVCAKEGFRI DRDKPTSAGP AADGRVKRPR  120
AQTRVGCKAL LVVKIQDSGS WVVSLFVKEH NHDLVPLDKV HSLRSHRHVS GSAKSLIDTL  180
QGAGIGPSGI MSALIKEYGG INNVGFTERD CRNYMRSSRQ RTLGGGTQLL LDFLRNKQYD  240
LVEHEWLQTI FADRRQWIPV YLRDTFFAEM SITQCSDSIN SFFDGYVNAS TTLQLFIMQY  300
EKALESRYEK EVKADYDTIN TAPLLKTPSP MEKQAAELYT RKLFTKFQEE LVETLTFSTK  360
VENKDAIAIY RVAKFGESHK AYFVSFDICE MKVSCSCQMF EFSGILCRHI LTVFRVTNVL  420
TLPSRYVLKR WTRNAKSGVM FEDCTSDMFN GSKESRTVQY NNLCHEAFKY VDEGIKSLDI  480
YNVAVSALQE AAHKVALAKK AGRRLAVSKR THREDHQFQG SQTNASCGDH QWSLQQPDSS  540
GNFPNWPKDE QDRKIQKLSC QLEQARRKCE IEKDVRLSAV VLDRSFPSFG PLANELHRIS  600
QTAN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649323.11e-169PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
SwissprotQ9SZL81e-123FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0K9RV790.0A0A0K9RV79_SPIOL; Uncharacterized protein
STRINGMigut.O00582.1.p1e-170(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-125FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]