PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7058_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 717aa MW: 79158.7 Da PI: 10.188

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7058_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.6e-30	84	168	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL++ r++m+ ++r++ k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea Neem_7058_f_2 84 RWPRQETLALLKTRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 168 8*******************************************************************866665..*****85 PP
2	trihelix	107	1.3e-33	448	533	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Neem_7058_f_2 448 RWPKVEVLALIKLRSGLEPRYQEAGPKGPLWEEISAGMQRMGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 533 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.059	81	143	IPR001005	SANT/Myb domain
CDD	cd12203	4.72E-25	83	148	No hit	No description
Pfam	PF13837	2.8E-20	83	169	No hit	No description
PROSITE profile	PS50090	6.47	83	141	IPR017877	Myb-like domain
SMART	SM00717	8.2E-4	445	507	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.795	447	505	IPR017877	Myb-like domain
CDD	cd12203	1.83E-29	447	512	No hit	No description
Pfam	PF13837	4.3E-23	447	534	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MQQEGGGTQS QYGEMTPAAT TTATPTTTTH ITQQQQPVES ASPISSRPPA ATSTTSNFDE 60 FMKLSGGGDE DEGDRAGGVA SGNRWPRQET LALLKTRSDM DAAFRDATVK GPLWEDVSRK 120 LAELGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY KFFSQLEALH SSTATTSNVP 180 VSLQMPVTTV TSSNAITLDV APVSIGIPMP ISSVRIPASH SPSTLGQPSN TAGSSRKRKR 240 QSSTTSSSTP RMMEFFESLM KQVMQKQETM QKRFLEVIEK REQDRMIREE AWKRQEMARL 300 AREHELMAQE RAISASRDSA IISFLQKITG QTIQLPPAVT IPAAPPPPAP AQAAPVVVLP 360 AVSLPTTTQH HVTPSSLPPE RRDQQNQQQM QSHHRHQQQQ QVKSAEVVRH QTASTSIPSE 420 VVMAIPEQQI PPSQEIASGG SFEPSSSRWP KVEVLALIKL RSGLEPRYQE AGPKGPLWEE 480 ISAGMQRMGY NRSAKRCKEK WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKKIL 540 GGGSTSGGGS STGAGSFNIS EERQPQQHQQ ESQKLDNTPA ATNPQESSNV STITPAPQLM 600 PVSESENKNA GSVDAQASSA GLPGSLFGEG NGGASNKPED IVKELMNQQG MQQQHQQPQT 660 SVGNDFDKAK RKRLNQGRQN KLAQQQQQLE QQERTKNIIK EESRKKNLVV WRAYTLS

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MQQEGGGTQS QYGEMTPAAT TTATPTTTTH ITQQQQPVES ASPISSRPPA ATSTTSNFDE  60
FMKLSGGGDE DEGDRAGGVA SGNRWPRQET LALLKTRSDM DAAFRDATVK GPLWEDVSRK  120
LAELGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY KFFSQLEALH SSTATTSNVP  180
VSLQMPVTTV TSSNAITLDV APVSIGIPMP ISSVRIPASH SPSTLGQPSN TAGSSRKRKR  240
QSSTTSSSTP RMMEFFESLM KQVMQKQETM QKRFLEVIEK REQDRMIREE AWKRQEMARL  300
AREHELMAQE RAISASRDSA IISFLQKITG QTIQLPPAVT IPAAPPPPAP AQAAPVVVLP  360
AVSLPTTTQH HVTPSSLPPE RRDQQNQQQM QSHHRHQQQQ QVKSAEVVRH QTASTSIPSE  420
VVMAIPEQQI PPSQEIASGG SFEPSSSRWP KVEVLALIKL RSGLEPRYQE AGPKGPLWEE  480
ISAGMQRMGY NRSAKRCKEK WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKKIL  540
GGGSTSGGGS STGAGSFNIS EERQPQQHQQ ESQKLDNTPA ATNPQESSNV STITPAPQLM  600
PVSESENKNA GSVDAQASSA GLPGSLFGEG NGGASNKPED IVKELMNQQG MQQQHQQPQT  660
SVGNDFDKAK RKRLNQGRQN KLAQQQQQLE QQERTKNIIK EESRKKNLVV WRAYTLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU947702	1e-70	KU947702.1 Toxicodendron vernicifluum microsatellite c24641 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439158.1	0.0	trihelix transcription factor GTL1 isoform X1
Swissprot	Q39117	3e-64	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A2H5PXW2	0.0	A0A2H5PXW2_CITUN; Uncharacterized protein
STRING	XP_006439158.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-66	Trihelix family protein