PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7049_f_12

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 692aa MW: 78172 Da PI: 6.1828

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7049_f_12	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	165.2	5.2e-51	377	525	1	152
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s++yk l +++ts ++ l+a++l+ ++P+ k+s+ Neem_7049_f_12 377 LRTLLIHCAQAVAADDRRSASELLKQIRQHSSPFGDGNQRLAQCFADGLEARLAGTGSQIYKGLISKRTS---AADILKAYQLYLAACPFRKLSN 468 6789**********************************************************999998...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152 +taN++I+ ++++ rvHiiDf+i +G+QWp+L+q ++ Rp+gpp+lRiTg++ p++ Neem_7049_f_12 469 FTANKTIMSLAQNSMRVHIIDFGILYGFQWPTLIQRISMRPGGPPKLRITGIEFPQP 525 **************************************************99886 PP
2	GRAS	140.6	1.6e-43	527	690	211	374
GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 ++llde+v+++s r+ + +l+++++P+ +++ + ++++ F++rf eal ++sa+fd+le+ +pre++er+ +E+e++gre+ nv+aceg er Neem_7049_f_12 527 KNLLDETVAVDSSRNIFFNLIRRINPDAFIHGITNGAYGAPFFVTRFREALFHFSAMFDMLETIVPREDRERMLIEKEIFGREALNVIACEGWER 621 5789***************************************************************************************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +er et+++W+ r +aGF + p++ +++k a +r + + + ++e++ +l++gWk+r ++++S+W+ Neem_7049_f_12 622 VERPETYKQWQVRNLRAGFIQRPFDRDIVKRAMNRVRSSYHKDFVIDEDNRWLLQGWKGRIIFALSVWK 690 ************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.057	351	670	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-48	377	525	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-41	527	690	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MDPRLRGFSG SVNGIQLSNQ PVSVFPNQNL VAGRFENIFL DHGVRDYNYV QPDPTHSNVV 60 SQSSVNHEED SPEDCDFSDA VLKYISQMLM EEDMEEKTCM LQESLDLQAA EKSFYDVLGK 120 KYPPSPEHNL TYVDPNWESL AGDASRNTQT FINGGSDVGS YLIDNSWIQN SGEFFTSQLH 180 TLPLSSISQS SYSSSNSVVT SVDGLVDSPS STLRLPDWKN ESQSIWQFRK GVEEASKFLP 240 SENELFFNLE VNQFLSQELK GGTNEMVVKV EKEDVEDFSS NGSRGRKNPY REAEDLEEEL 300 ERSSKQAAIY IDSPLRTEMF DTVLLCSLGA RSPMVDLREA LKNAASRNAQ KNGQSKGSNG 360 GKGRGKKQSG KTEVVDLRTL LIHCAQAVAA DDRRSASELL KQIRQHSSPF GDGNQRLAQC 420 FADGLEARLA GTGSQIYKGL ISKRTSAADI LKAYQLYLAA CPFRKLSNFT ANKTIMSLAQ 480 NSMRVHIIDF GILYGFQWPT LIQRISMRPG GPPKLRITGI EFPQPAKNLL DETVAVDSSR 540 NIFFNLIRRI NPDAFIHGIT NGAYGAPFFV TRFREALFHF SAMFDMLETI VPREDRERML 600 IEKEIFGREA LNVIACEGWE RVERPETYKQ WQVRNLRAGF IQRPFDRDIV KRAMNRVRSS 660 YHKDFVIDED NRWLLQGWKG RIIFALSVWK PA

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MDPRLRGFSG SVNGIQLSNQ PVSVFPNQNL VAGRFENIFL DHGVRDYNYV QPDPTHSNVV  60
SQSSVNHEED SPEDCDFSDA VLKYISQMLM EEDMEEKTCM LQESLDLQAA EKSFYDVLGK  120
KYPPSPEHNL TYVDPNWESL AGDASRNTQT FINGGSDVGS YLIDNSWIQN SGEFFTSQLH  180
TLPLSSISQS SYSSSNSVVT SVDGLVDSPS STLRLPDWKN ESQSIWQFRK GVEEASKFLP  240
SENELFFNLE VNQFLSQELK GGTNEMVVKV EKEDVEDFSS NGSRGRKNPY REAEDLEEEL  300
ERSSKQAAIY IDSPLRTEMF DTVLLCSLGA RSPMVDLREA LKNAASRNAQ KNGQSKGSNG  360
GKGRGKKQSG KTEVVDLRTL LIHCAQAVAA DDRRSASELL KQIRQHSSPF GDGNQRLAQC  420
FADGLEARLA GTGSQIYKGL ISKRTSAADI LKAYQLYLAA CPFRKLSNFT ANKTIMSLAQ  480
NSMRVHIIDF GILYGFQWPT LIQRISMRPG GPPKLRITGI EFPQPAKNLL DETVAVDSSR  540
NIFFNLIRRI NPDAFIHGIT NGAYGAPFFV TRFREALFHF SAMFDMLETI VPREDRERML  600
IEKEIFGREA LNVIACEGWE RVERPETYKQ WQVRNLRAGF IQRPFDRDIV KRAMNRVRSS  660
YHKDFVIDED NRWLLQGWKG RIIFALSVWK PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-37	360	691	1	379	Protein SCARECROW
5b3h_D	2e-37	360	691	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429105.1	0.0	scarecrow-like protein 9
Refseq	XP_006480839.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A067EBD1	0.0	A0A067EBD1_CITSI; Uncharacterized protein
STRING	XP_006480839.1	0.0	(Citrus sinensis)
STRING	XP_006429104.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein