PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7002_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35013.2 Da PI: 7.6844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.8 | 1.1e-32 | 2 | 77 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s +g+l g+kktLvfykgrap+gekt+Wvmheyrl Neem_7002_f_4 2 GEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGsNGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 77 578*************************************9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.336 | 1 | 99 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-38 | 2 | 99 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-15 | 6 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGEKEWYFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV CSGSNGALLG MKKTLVFYKG 60 RAPRGEKTKW VMHEYRLDGD FSYRHTCKEE WVICRIFHKA GEKKNGYTQG QSYMLEAYNS 120 CPTAGCLPPL LECQSHNPME SDDLLVQQTE NDLKSSSCCL ISNSQSHHHL FPINGLFQTS 180 TIISTTPNSN STSPSPSMLF KSLLSHQDFT LKQQSTSENT IQKHCKTEAA NFSHFQLPDD 240 TSAAAANSWM DKIQPNPYQN PLFFEIGCSF PGFTQGFTTT ATGTGVNDMS TSAAFNRTTG 300 FQVMCGESWP LDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 1 | 99 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 1 | 99 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 1 | 99 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 1 | 99 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 1 | 99 | 71 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 1 | 99 | 68 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 1 | 99 | 68 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021284753.1 | 1e-125 | LOW QUALITY PROTEIN: protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | V4SLQ3 | 1e-123 | V4SLQ3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435428.1 | 1e-124 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-60 | NAC family protein |