PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6855_f_7
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 458aa    MW: 49869.1 Da    PI: 7.7461
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6855_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.82.7e-14259308958
                    CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                    r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  ++ ++ +
  Neem_6855_f_7 259 RMLSNRESARRSRRRKQAHLTELETQVSQLRMENSSLLKRLTDISHKYNE 308
                    9*************************************999988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-15247315IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10258305No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-10259306No hitNo description
PROSITE profilePS5021710.197259308IPR004827Basic-leucine zipper domain
PfamPF001709.8E-12259306IPR004827Basic-leucine zipper domain
PROSITE patternPS000360259273IPR004827Basic-leucine zipper domain
PfamPF124987.4E-46322447IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDRVFSVGEI SEQFWSTIPS SSNNSPKDTH SCKMNRSESE WAFQRFLQEA HHVAASGSSP  60
QQSSSSAAGD SKSDSVVEIK STLDNSELKD DSNTAKTATS TAAGNPVSFT VSPNIPVDPE  120
EYQAFLKSKL NLACAAVALS RASCIKTQHS AARADSGSQA SNTSQLGSQA SKGAVHDLSR  180
SQDKDANGLH GTPFISASLK KTEVPVRSIN SGSSREQSED EEADGETATT ENMDPADAKR  240
VRRCWELVDH KLRTYVIWRM LSNRESARRS RRRKQAHLTE LETQVSQLRM ENSSLLKRLT  300
DISHKYNEAA VDNRVLKADV ETLRAKVKMA EESVKRITGL NPLFHAMPEM SSMSMSSFAG  360
SPSDTSADAA VPVQDDPKHH FYRPPSDHTM STRDLRIHNA LTDISSVENV QANAAAAAVP  420
GNKIGRTASM QRVASLENLQ KRIRGGVSPR GPNSSEEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267274RRSRRRKQ
2269274SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432930.10.0light-inducible protein CPRF2
RefseqXP_006471677.20.0light-inducible protein CPRF2
SwissprotQ990901e-135CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLV4T4710.0V4T471_9ROSI; Uncharacterized protein
STRINGXP_006471677.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-66bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]