PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6790_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 209aa MW: 23986.2 Da PI: 7.7386 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.7 | 2.5e-32 | 3 | 130 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p+G+ F P+d+elv +yLk+kv++ ++ +++ike+++y++eP++Lp ++++++++ yfF+ ++++ +g+r nr++ g+W++tg+ + ++ Neem_6790_f_1 3 PAGVGFYPEDKELVFHYLKRKVSDGEN--FRFIKELELYDHEPSKLPsLAHESGHSKSYFFALLQRSHLQGNRINRQVPGGFWRKTGSPAFINDEA 96 89*********************9993..368***************55667788899************************************** PP NAM 97 gelvglkktLvfykg..rapkgektdWvmheyrl 128 g+ + +k++L++yk ++ ++ekt W+m+ey l Neem_6790_f_1 97 GTRIATKTSLAYYKRdpTSDRSEKTGWLMKEYML 130 *************7534667789*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-31 | 2 | 137 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.38 | 2 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-17 | 3 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MFPAGVGFYP EDKELVFHYL KRKVSDGENF RFIKELELYD HEPSKLPSLA HESGHSKSYF 60 FALLQRSHLQ GNRINRQVPG GFWRKTGSPA FINDEAGTRI ATKTSLAYYK RDPTSDRSEK 120 TGWLMKEYML VESQPPHRND KESDRMAPVD YSIMEVIGSE YTLPSNSANS NAFSFPFAPV 180 DYSIMVQNYL PMCLQLASYL FIIPAKSQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 2 | 139 | 20 | 152 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042455.1 | 9e-41 | uncharacterized protein LOC18043989 isoform X2 | ||||
TrEMBL | V4TLA9 | 4e-39 | V4TLA9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006437371.1 | 7e-40 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18525 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 3e-21 | NAC domain containing protein 58 |