PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6787_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 395aa MW: 44009.1 Da PI: 9.845

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6787_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	8.9e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Neem_6787_f_1 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.014	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-23	192	238	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MYHHHQHQGK SIHSSSRMPM PTERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQAHN GNNKIGKRTM 120 SQKLIYNSFK FARKIKIAMH FFSCKAHTGI RGLNFKSSGV GPVAVAAERM PEANGTHMNN 180 LSIGPQPNKS LHISETIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA VLEKAQETLG 240 RQNLGTAGLE AAKVQLSELV SKVSTQCLNS TFSDLKDLQG GLYPQQPQAN QPTDCSMDSC 300 LTSCEGSQKD QEIHNGGIAL RPFHGTTTLE PKEIVEEAML QQTELKWGED LKESKFLSSI 360 GKERGPGELS IGVRPQGEKG QWQQQFSRGE IQNKE

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MYHHHQHQGK SIHSSSRMPM PTERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQAHN GNNKIGKRTM  120
SQKLIYNSFK FARKIKIAMH FFSCKAHTGI RGLNFKSSGV GPVAVAAERM PEANGTHMNN  180
LSIGPQPNKS LHISETIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA VLEKAQETLG  240
RQNLGTAGLE AAKVQLSELV SKVSTQCLNS TFSDLKDLQG GLYPQQPQAN QPTDCSMDSC  300
LTSCEGSQKD QEIHNGGIAL RPFHGTTTLE PKEIVEEAML QQTELKWGED LKESKFLSSI  360
GKERGPGELS IGVRPQGEKG QWQQQFSRGE IQNKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443380.1	0.0	myb-related protein 2
Refseq	XP_006479082.1	0.0	myb-related protein 2
Refseq	XP_006479083.1	0.0	myb-related protein 2
Refseq	XP_024044798.1	0.0	myb-related protein 2
Swissprot	Q9SQQ9	1e-146	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A067EVY1	0.0	A0A067EVY1_CITSI; Uncharacterized protein
TrEMBL	V4VTW0	0.0	V4VTW0_9ROSI; Uncharacterized protein
STRING	XP_006443379.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-149	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]