PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6777_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 873aa MW: 97200 Da PI: 5.7987

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6777_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	21	6.4e-07	598	623	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek+i+l++l++yF++++kdAAk++g Neem_6777_f_4 598 AEKTITLQVLRQYFAGSLKDAAKSIG 623 589*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00666	1.1E-25	776	859	IPR000270	PB1 domain
PROSITE profile	PS51745	25.665	776	859	IPR000270	PB1 domain
CDD	cd06407	1.08E-42	777	857	No hit	No description
SuperFamily	SSF54277	1.37E-22	777	859	No hit	No description
Pfam	PF00564	2.0E-18	777	857	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-23	777	855	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MDLDYMDELL AEGCWLETID GSEFPHSIPS TSTTLFDSSF VWPASETING DKSMSHSQQN 60 NQNDWQKLFF QGTSTMSELQ SQSPISNQSL SHSVINVDGG YSQLENNVTE DSELSGRWWI 120 APRANSGPST SVIQRLIWAL GNIKDFTNNK DVLIQLWVPI SRAGGRVLTT YDQPFSVDLN 180 CQKLANYRDI SVNYYFSAEE DSKDVTGLPG RVFLGKVPEW TPDVQFFRSD EYSRVDHAQQ 240 YDVRGTLAVP VFEQGSRTCL GVIEVVMTTR KIKYGSELES VRKALEAVDL RTSEVPSIEN 300 IKVSDNLYQA ALPEIQEVLR CACETHRLPL AQTWVPCIQQ GKGGFWHSHK TYNNCVSTVD 360 RACHIADPDM WGFHEACSEH HLLKGQGVAG GAFMTNQPCF SSDITSLKKT KYPLSHHARM 420 FGLCGAVAIR LRSILTGKAD FVLEFFLPKG CRDPEEQRKM LGSLSIIIQQ VCQSLRVVAD 480 EELEEETSSP ISEVVSPLDG ILSREKMFKV DTHSEKYSQE NSCWTACVTA VQKDCDVSLN 540 QKGEPRMVPG EKFLKVRHHD KDFSLKGSGE YFGDSNSVEG SFSSVALGRT GEKRRTKAEK 600 TITLQVLRQY FAGSLKDAAK SIGGDSGSLQ IGSFYTNFRE LASPNVSGTS PLSTSMPADH 660 SKPTSMKPKG RNFKPRAAKS PSSSCSQSSS SSQCVSSGQH PSVNNIAGGE DPMVGESSGD 720 VVLKRGRGEA ELHASSEEPK LMPRSQSYKS LREQHTSELL PSLPENYGRI SQDVDGHRVK 780 VTFGEEKIRL RIQDNWKFQD LSQEIARRFS IEDMSLFDLK YLDDDSEWVL LTCDADLEEC 840 IDVCRLSQSQ TIKLSLQISH HLMERRLGCS SNS

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MDLDYMDELL AEGCWLETID GSEFPHSIPS TSTTLFDSSF VWPASETING DKSMSHSQQN  60
NQNDWQKLFF QGTSTMSELQ SQSPISNQSL SHSVINVDGG YSQLENNVTE DSELSGRWWI  120
APRANSGPST SVIQRLIWAL GNIKDFTNNK DVLIQLWVPI SRAGGRVLTT YDQPFSVDLN  180
CQKLANYRDI SVNYYFSAEE DSKDVTGLPG RVFLGKVPEW TPDVQFFRSD EYSRVDHAQQ  240
YDVRGTLAVP VFEQGSRTCL GVIEVVMTTR KIKYGSELES VRKALEAVDL RTSEVPSIEN  300
IKVSDNLYQA ALPEIQEVLR CACETHRLPL AQTWVPCIQQ GKGGFWHSHK TYNNCVSTVD  360
RACHIADPDM WGFHEACSEH HLLKGQGVAG GAFMTNQPCF SSDITSLKKT KYPLSHHARM  420
FGLCGAVAIR LRSILTGKAD FVLEFFLPKG CRDPEEQRKM LGSLSIIIQQ VCQSLRVVAD  480
EELEEETSSP ISEVVSPLDG ILSREKMFKV DTHSEKYSQE NSCWTACVTA VQKDCDVSLN  540
QKGEPRMVPG EKFLKVRHHD KDFSLKGSGE YFGDSNSVEG SFSSVALGRT GEKRRTKAEK  600
TITLQVLRQY FAGSLKDAAK SIGGDSGSLQ IGSFYTNFRE LASPNVSGTS PLSTSMPADH  660
SKPTSMKPKG RNFKPRAAKS PSSSCSQSSS SSQCVSSGQH PSVNNIAGGE DPMVGESSGD  720
VVLKRGRGEA ELHASSEEPK LMPRSQSYKS LREQHTSELL PSLPENYGRI SQDVDGHRVK  780
VTFGEEKIRL RIQDNWKFQD LSQEIARRFS IEDMSLFDLK YLDDDSEWVL LTCDADLEEC  840
IDVCRLSQSQ TIKLSLQISH HLMERRLGCS SNS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435364.1	0.0	protein NLP4
TrEMBL	A0A173G8J0	0.0	A0A173G8J0_PONTR; Transcription factor NLP4
STRING	XP_006435364.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein