PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_66_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 96aa    MW: 11045.9 Da    PI: 9.6557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_66_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++k+ G g+W++ ++  g+ R++k+c++rw +yl
      Neem_66_f_4 14 KGPWTPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.82965IPR017930Myb domain
SMARTSM007175.5E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-171461IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-251592IPR009057Homeodomain-like
CDDcd001673.62E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.0E-106592IPR009057Homeodomain-like
PROSITE profilePS512947.7256696IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEILVEYIK RNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TDEEEKLVIQ LHGILGNRFS SICYLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-201295587B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285604e-37FR828560.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb9 gene), cultivar Yellow Island.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445088.13e-59transcription factor MYB41
RefseqXP_006491064.13e-59transcription factor MYB41
SwissprotQ9M2D94e-56MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A067H2J78e-58A0A067H2J7_CITSI; Uncharacterized protein
TrEMBLA0A2H5NPX28e-58A0A2H5NPX2_CITUN; Uncharacterized protein
TrEMBLV4TDD28e-58V4TDD2_9ROSI; Uncharacterized protein
STRINGXP_006491064.11e-58(Citrus sinensis)
STRINGXP_006445088.11e-58(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-58myb domain protein 17