PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6689_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YB

Protein Properties

Length: 186aa MW: 20484.8 Da PI: 7.9594

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6689_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.7	4.5e-55	38	133	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf++y+++lk yl++yrelege+ Neem_6689_f_1 38 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDNYADQLKRYLHRYRELEGER 133 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-53	35	149	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-40	40	146	IPR009072	Histone-fold
Pfam	PF00808	8.4E-28	43	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.8E-19	71	89	No hit	No description
PROSITE pattern	PS00685	0	74	90	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.8E-19	90	108	No hit	No description
PRINTS	PR00615	5.8E-19	109	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MVDNIGNNLD REGGCHKYNF AAGASSSVSL AGEDGVIKEQ DRLLPIANVG RIMKQILPPN 60 AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALATL GFDNYADQLK 120 RYLHRYRELE GERASQNKAG NSNTSEGKHE ASNVYRGEPQ GRPAVSASTP LKFNLTDTNS 180 NGSRRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-45	37	128	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-45	37	128	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891930.1	8e-88	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	3e-62	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2N9ECM2	7e-87	A0A2N9ECM2_FAGSY; Uncharacterized protein
STRING	VIT_07s0104g01640.t01	2e-86	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-64	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]