PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6674_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 219aa MW: 24064.9 Da PI: 8.0848

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6674_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	155	200	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++Le+Av++Ik Lq Neem_6674_f_3 155 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLELAVQHIKGLQ 200 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.005	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-14	152	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-11	153	204	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-12	154	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-12	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	155	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVFNLTAGFS VTRETGNYNS QGGSSSGLGV SRLKSQLSFT RQDSLSQISE VSENGIDGVN 60 SSSGHQNATH SYATTSFGMD SWENGNSIVF SSPPNKRTKT LDGDILDCLN ALETQFSMPQ 120 TTLEMATVEK FLHIPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK KLQELVPNMD 180 KQTSYADMLE LAVQHIKGLQ NQVQGMDRGD YKDVGIVSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443135.1	1e-122	transcription factor bHLH128 isoform X1
Refseq	XP_006478879.1	1e-122	transcription factor bHLH128 isoform X1
Refseq	XP_006478880.1	1e-122	transcription factor bHLH128 isoform X2
Refseq	XP_024045060.1	1e-122	transcription factor bHLH128 isoform X2
Swissprot	Q8H102	6e-71	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A067E9F0	1e-122	A0A067E9F0_CITSI; Uncharacterized protein
STRING	XP_006478879.1	1e-122	(Citrus sinensis)
STRING	XP_006443135.1	1e-122	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-65	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]