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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_6632_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 266aa MW: 30152.9 Da PI: 6.4203 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 17 | 1.6e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ Cg+ F++ L H+++H
Neem_6632_f_1 54 YSCSFCGREFKSAQALGGHMNVH 76
99*******************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 9.83E-7 | 51 | 81 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 52 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 12.237 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0017 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 4.2E-6 | 54 | 77 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 266 aa Download sequence Send to blast |
MDQQARFFNL PASGSKSSSS ESSFVISNKP WEEEAFAEDA ARRFGGFIWP PRSYSCSFCG 60 REFKSAQALG GHMNVHRRDK ARLKQSPIKS LDHHNYIQNP PVESKIFAYP NKVCSMVYQP 120 NIVNHNSGEL LPSSLSPITV PTVSFTHQKH TYDQSLVLPI FQDYQKMDPS LSCSTSDIRL 180 FSILDSEIEE DHPKKQETRP PEQVDVIKSD HLPTMSLNLQ VGSKIEERIS CKVRTTNDVA 240 PPNFLLKEDM EDNLDLELRL GDQPKV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1njq_A | 1e-12 | 49 | 76 | 2 | 29 | superman protein |
| 2l1o_A | 1e-12 | 49 | 76 | 2 | 29 | Transcriptional regulator SUPERMAN |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5128 | 25 | 44 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06070.1 | 2e-23 | C2H2 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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