PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6585_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 658aa    MW: 72312.2 Da    PI: 6.4282
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6585_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.43.6e-19199242145
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                    kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+
  Neem_6585_f_3 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTREN 242
                    79*******************.********************987 PP
2Response_reg76.31.1e-25171251109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl vdD+p+ + l++++l++ +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++g+++++ + +  Ga
  Neem_6585_f_3  17 VLAVDDDPTCLLLIETLLRRCQY-HVTTTSQAITALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGA 110
                    799********************.***************888888*******************87754.558*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ +eel +
  Neem_6585_f_3 111 CDYLLKPVRIEELKN 125
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.0E-1581658IPR017053Response regulator B-type, plant
SuperFamilySSF521725.12E-3613137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-4214138No hitNo description
SMARTSM004485.9E-3115127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.17716131IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.0E-2317125IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.34E-2618130No hitNo description
Gene3DG3DSA:3.40.50.23008.6E-42180183No hitNo description
Gene3DG3DSA:1.10.10.603.1E-20196251IPR009057Homeodomain-like
SuperFamilySSF466895.55E-12196250IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-16199242IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTVEQTNGEQ FPSGLRVLAV DDDPTCLLLI ETLLRRCQYH VTTTSQAITA LKLLRENKNK  60
FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSGNGDPK LVMKGITHGA CDYLLKPVRI  120
EELKNIWQHV VRRKKFDKTD QNNSDNQGKP NHGSGEAGGM GNPDQNGKLN KKRKDQNEDE  180
DEEHDENEHE NEDPTTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVEKLTR  240
ENKYRLYLKR ISCVANQQAN MVAALGSTDP SYLRMGTGLG NFHTLAGPGQ FQNTTFRTFP  300
PSGMLGRLNT PAGLGMHGLP SSGMIQLRHT QNSDGTANDQ GKFHPALLPG SHSGNILQGM  360
PTSLELDQLQ PNKNITSIGE LPNAKDNTSV FPVSSSFSDA RVGFGRSTNS LLGVTNNHLM  420
LEGHPQEAQG KMFGNQSLMS LNSGSSSHLP DHGRCNDNWS SAVQSSGIQP NSFPLGDCFK  480
QPALHPNNLR DNLSTMALQI GNNQCDVSSL PTLPNRLQDS KADLQFQAVQ DAPYSSNVMC  540
NPLNSSIPIN GDVGHLGQSL DPNKTIFHRS NEFDSLGQSN FIDAFPMKIN EVQRSAMQTS  600
SNLKEGYLMG QQKTQGSYMS SSVDSLEDLV SSMVKEEQDK TLAEGNFGCN GYSLRTCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20195252164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483453.10.0two-component response regulator ARR12
TrEMBLA0A067FJF70.0A0A067FJF7_CITSI; Two-component response regulator
STRINGXP_006483453.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-152response regulator 12