PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_654_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 712aa    MW: 80092.1 Da    PI: 6.4728
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_654_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.4e-24123223198
                   EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el
  Neem_654_f_1 123 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDTFVFL--RGENGEL 217
                   99****************************9445555669************************************************..4499999 PP

                   EEEEE- CS
            B3  93 vvkvfr 98 
                   +v v+r
  Neem_654_f_1 218 RVAVRR 223
                   **9997 PP
2Auxin_resp1064.5e-35249328183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++t+++F v+Y+Pr+  s+F++ ++k+++a+++k++vGmR+km+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk
  Neem_654_f_1 249 ASHAVATQTMFVVYYKPRT--SQFIIGLNKYLEAVNNKFTVGMRYKMRFEGEDSPERRFSGTIVGVEDFSP-HWQDSKWRSLK 328
                   789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-40114238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-38116252IPR015300DNA-binding pseudobarrel domain
CDDcd100174.33E-20121223No hitNo description
SMARTSM010192.1E-22123225IPR003340B3 DNA binding domain
PfamPF023627.1E-22123223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576123225IPR003340B3 DNA binding domain
PfamPF065072.7E-32249328IPR010525Auxin response factor
PfamPF023091.5E-11575689IPR033389AUX/IAA domain
PROSITE profilePS5174525.629600681IPR000270PB1 domain
SuperFamilySSF542771.18E-12604676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MANRVGSLSQ PCSSSDDLYV ELWKACAGPL VDVPKQGERV YYFPQGHMEQ LEASTNQELN  60
QRIPLFHLPS KILCRVIHIQ LLAEQETDEV YAQITLLPEP SQQEPTTPDP CPSESPRPTL  120
RSFCKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LAAGDTFVFL RGENGELRVA VRRLAHQQSS MPSSVISSQS  240
MHLGVLATAS HAVATQTMFV VYYKPRTSQF IIGLNKYLEA VNNKFTVGMR YKMRFEGEDS  300
PERRFSGTIV GVEDFSPHWQ DSKWRSLKVQ WDEPASITRP DRVSPWDLEP FVASAASNLV  360
QPVLAKNKRA RPAIELPAVD LSSATSSPWN SRMTQSHDLT QSHDLTQLSV TPDGKRCDNH  420
VAWHHKQNDF NSSNNSMSRT QSDGEWLTSP HVSFSQQLFQ DAIDDNKNVS AWSAISGYST  480
THSSKLNNDP ILEQVETGRK TEMATSCRLF GIELINHSVS STPMEKAPIS SFNTEGQIVS  540
TLSLADSDEK SDLSKAFKEK KQEQLQISPK ESQSKQNCLT STRSRTKEVS ENKFFYFAVE  600
KCQKVQMQGF AVGRAVDLTT LVCYSQLIDE LEEMFDIKGQ LRSRDKWEIV YTDDEGDMML  660
VGDDPWHEFC NMVRRIFICS SQDVKKMTPG SKLPISSVDG EGILLSSDSA EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1731535116355Auxin response factor 1
4ldw_A1e-1731535116355Auxin response factor 1
4ldw_B1e-1731535116355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476351.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A067GD790.0A0A067GD79_CITSI; Auxin response factor
STRINGXP_006439306.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9