PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6534_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRF

Protein Properties

Length: 600aa MW: 65431.6 Da PI: 7.8514

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6534_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.7e-24	221	265	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Neem_6534_f_1 221 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 265 79****************************************985 PP
2	QLQ	63	7.9e-22	152	188	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k Neem_6534_f_1 152 GPFTPSQWMELEHQALIYKYIIANVPIPSNLLIPIRK 188 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.5E-13	152	188	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.0E-16	153	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.875	153	188	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	221	265	IPR014977	WRC domain
Pfam	PF08879	7.1E-21	222	264	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MDFGVVGFDG LVGSETAAGF GSLASDSVTT QKWYGSSGFL KQERSSNNED DWRSSKVAKT 60 DDFTAPKTML LQQRDNILLR SNSTLFDGQQ QQQQMLSFAS PKSDVFAPDR TSENATLPYY 120 HLTSSAYSRN TGYSCVSLNG ASMRVGLAGA RGPFTPSQWM ELEHQALIYK YIIANVPIPS 180 NLLIPIRKAL DSSGFSSFPG GLIRPNTLGW GTLHLGFNNT DPEPGRCRRT DGKKWRCSRD 240 AVADQKYCER HMNRGRHRSR KPVEGQSGHS VAAATSASKL IPNTSSMVMG HTAGGGVSSS 300 LTVEHQQQLK NLQPSCASNL SASTAPINRM FLDKVSVDGV KQDTPSLSML SPTIDSKLKK 360 NSFLFSKQQI PFEESSRSQF GLVSSDSLLN PSQRSPSLLT CRNFGSSQDL ADQETESQHS 420 LRQFMDEWPR YQPNRTAISW PEIDMQSDRT QLSISIPATS SDFMSSTSSP NNDKLALSPL 480 RLSHEFDPIQ MGLGVGSVLN EPSQRQPTNW IPISWETSMG GPLGEVLHNT NNNNSTADGK 540 YSSALNLTNE DWDNSPRLSP TGVLQKTAFG SLSNSSAGSS PRAETNKARE GASLCNDHLG

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MDFGVVGFDG LVGSETAAGF GSLASDSVTT QKWYGSSGFL KQERSSNNED DWRSSKVAKT  60
DDFTAPKTML LQQRDNILLR SNSTLFDGQQ QQQQMLSFAS PKSDVFAPDR TSENATLPYY  120
HLTSSAYSRN TGYSCVSLNG ASMRVGLAGA RGPFTPSQWM ELEHQALIYK YIIANVPIPS  180
NLLIPIRKAL DSSGFSSFPG GLIRPNTLGW GTLHLGFNNT DPEPGRCRRT DGKKWRCSRD  240
AVADQKYCER HMNRGRHRSR KPVEGQSGHS VAAATSASKL IPNTSSMVMG HTAGGGVSSS  300
LTVEHQQQLK NLQPSCASNL SASTAPINRM FLDKVSVDGV KQDTPSLSML SPTIDSKLKK  360
NSFLFSKQQI PFEESSRSQF GLVSSDSLLN PSQRSPSLLT CRNFGSSQDL ADQETESQHS  420
LRQFMDEWPR YQPNRTAISW PEIDMQSDRT QLSISIPATS SDFMSSTSSP NNDKLALSPL  480
RLSHEFDPIQ MGLGVGSVLN EPSQRQPTNW IPISWETSMG GPLGEVLHNT NNNNSTADGK  540
YSSALNLTNE DWDNSPRLSP TGVLQKTAFG SLSNSSAGSS PRAETNKARE GASLCNDHLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018432.2	0.0	PREDICTED: growth-regulating factor 1
Swissprot	Q6AWY3	1e-109	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A061FG66	0.0	A0A061FG66_THECC; Growth-regulating factor 1
STRING	EOY15657	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	4e-98	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]