PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6529_f_8

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 621aa MW: 69589 Da PI: 6.2862

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6529_f_8	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	47.6	2.9e-15	338	396	3	61
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely 61 +lL cA+av++ d++ a+++L+++++++sp gd +qRla+yf+++L+arla++ + + Neem_6529_f_8 338 TLLNVCAQAVANYDQRTANEILQQIRQHSSPFGDGNQRLAHYFANGLEARLAGTRTPIR 396 68999***********************************************9666555 PP
2	GRAS	179.8	2e-55	414	616	171	374
GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ vpf++n+ +a+++++++le+L+++++E ++Vn+++++ +l+d++v ++s+rd+vL+l+k+++P+++++ + hn++ Fl rf eal ++s+ Neem_6529_f_8 414 RFSVPFDYNA-IAEKWQNIQLEDLKIEKEEITVVNCMYRMRNLPDDTVVINSPRDAVLELIKKINPDIFILGVVNGTHNAPFFLPRFREALFHFST 508 689*****.7******************************************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +fd++e+++pre++ ri+ Ere+ g++++nv+aceg er+er et+++W++r +aGF++++l++++ k++ +l++ + ++e +++++gW Neem_6529_f_8 509 FFDMFESTVPREDQGRIVFEREIYGKDAMNVIACEGMERVERPETYKQWQARNLRAGFRQLQLDKDILKNVMTLVKSNFHPDFVIDEVGQWMLQGW 604 ***********************************************************************9998888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r +++S+W+ Neem_6529_f_8 605 KGRLAYALSVWK 616 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	8.768	310	391	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-12	338	396	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	25.206	413	596	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-53	414	616	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MNTLLQGFSS SMNHLQFDHG SASVHSNQHH ADKFILNDNS IDSPPPPTPP SLETNPRPPS 60 ASTSSSSVSS YGDPADSSEL SHATLRYISD MLMEEDLEGK TCMLQDCLAL QAAEKSFYEV 120 LGQKYPPSPN QASPCLNQNS NRQNDFCTIS SYGDGRNGSS ARCLAEPNWI SNQGNCSLPV 180 VQNSPENSII VQSLYNEIQP FGLTGEVREA SNFPQIDDTV IINSKSVAST AKERGYSSPY 240 GSRGRKSYEL EDSNYLEEGR SNKHCAISVA EYEPSEMIDE VVLCKCENNK TATCLIHGFF 300 PNGSSGKVQQ NGQSKGSNGG TKRSKRKGKK KEVVDLWTLL NVCAQAVANY DQRTANEILQ 360 QIRQHSSPFG DGNQRLAHYF ANGLEARLAG TRTPIRTHLC GRASAAEIIQ GYKRFSVPFD 420 YNAIAEKWQN IQLEDLKIEK EEITVVNCMY RMRNLPDDTV VINSPRDAVL ELIKKINPDI 480 FILGVVNGTH NAPFFLPRFR EALFHFSTFF DMFESTVPRE DQGRIVFERE IYGKDAMNVI 540 ACEGMERVER PETYKQWQAR NLRAGFRQLQ LDKDILKNVM TLVKSNFHPD FVIDEVGQWM 600 LQGWKGRLAY ALSVWKPIQD S

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MNTLLQGFSS SMNHLQFDHG SASVHSNQHH ADKFILNDNS IDSPPPPTPP SLETNPRPPS  60
ASTSSSSVSS YGDPADSSEL SHATLRYISD MLMEEDLEGK TCMLQDCLAL QAAEKSFYEV  120
LGQKYPPSPN QASPCLNQNS NRQNDFCTIS SYGDGRNGSS ARCLAEPNWI SNQGNCSLPV  180
VQNSPENSII VQSLYNEIQP FGLTGEVREA SNFPQIDDTV IINSKSVAST AKERGYSSPY  240
GSRGRKSYEL EDSNYLEEGR SNKHCAISVA EYEPSEMIDE VVLCKCENNK TATCLIHGFF  300
PNGSSGKVQQ NGQSKGSNGG TKRSKRKGKK KEVVDLWTLL NVCAQAVANY DQRTANEILQ  360
QIRQHSSPFG DGNQRLAHYF ANGLEARLAG TRTPIRTHLC GRASAAEIIQ GYKRFSVPFD  420
YNAIAEKWQN IQLEDLKIEK EEITVVNCMY RMRNLPDDTV VINSPRDAVL ELIKKINPDI  480
FILGVVNGTH NAPFFLPRFR EALFHFSTFF DMFESTVPRE DQGRIVFERE IYGKDAMNVI  540
ACEGMERVER PETYKQWQAR NLRAGFRQLQ LDKDILKNVM TLVKSNFHPD FVIDEVGQWM  600
LQGWKGRLAY ALSVWKPIQD S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	6e-13	417	584	214	385	Protein SHORT-ROOT
5b3h_E	6e-13	417	584	214	385	Protein SHORT-ROOT
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	329	KRSKRKGKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488350.1	0.0	scarecrow-like protein 30 isoform X1
Refseq	XP_024034701.1	0.0	scarecrow-like protein 30
TrEMBL	V4RTU6	0.0	V4RTU6_9ROSI; Uncharacterized protein
STRING	XP_006488350.1	0.0	(Citrus sinensis)
STRING	XP_006424858.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	7e-88	GRAS family protein