PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6527_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family E2F/DP
Protein Properties Length: 453aa    MW: 50697.5 Da    PI: 4.9547
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6527_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.34.8e-27163228171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    r+++sL+llt+kf++l++++++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  Neem_6527_f_1 163 RYDSSLGLLTRKFVNLIQEAKDGTLDLNRTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 228
                    6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-29160229IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-17163226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-35163228IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-25165228IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440746.54E-25265365No hitNo description
CDDcd146605.82E-35265366No hitNo description
PfamPF164215.9E-24265363IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MANPAEDPTR PHSHPSQIQF QLLQNRNQTQ SSSSTCIGAN PTLHSFLGRL PFPSTHSSDN  60
NTDDNVDTST DIKHIINKDD THSAFARLAL KQTNDLGNHV AQNSGQAPVP RRSKVLNDPL  120
LEPESCASGK SNRKPKVLKF TKSGTQRTND DAPNGLNPAN SCRYDSSLGL LTRKFVNLIQ  180
EAKDGTLDLN RTAEVLEVQK RRIYDITNVL EGIGLIEKTS KNHIRWKGSD CSGPRELDDQ  240
VARLKTLDKH LVYLTNYLYL WIPSQAEIGS LYAEECGIDN SIREKQELLR TLEQNENHQK  300
YLFLTEEDIS SLPCFQNQTL IAIKAPQASY IEVPDPDEEI SFLKRQYKMT VRSTTGPIDL  360
YLLSKYECQA EDISIQQTKS VDASTCNCGP CGMQTPGLVS EHDDDQKACF GTFDLMSSET  420
SGIQKIVPSD CDIDDDYWLR SDPEVSITDL WSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-25158228273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038710.10.0transcription factor E2FC isoform X2
TrEMBLA0A067HAK60.0A0A067HAK6_CITSI; Uncharacterized protein
STRINGXP_006473646.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-99E2F/DP family protein