PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6492_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 376aa MW: 42492.6 Da PI: 8.9079

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6492_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.8	2.6e-50	3	128	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s+++ Neem_6492_f_1 3 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENS 97 79*************************.89***********8778899************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl Neem_6492_f_1 98 RSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 128 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.912	2	149	IPR003441	NAC domain
SuperFamily	SSF101941	5.89E-56	3	148	IPR003441	NAC domain
Pfam	PF02365	5.3E-25	4	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MVMPGFRFHP TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWFF 60 YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSENSRSI GLKKTLVFYS GKAPKGIRTS 120 WIMNEYRLPQ HETERYQKAE ISLCRVYKRA GVEDHPSLPR ALPTSRASSS RSMSSTSTHS 180 DKKLYPPRQP EAAHHHHYVM ERFQAFGGQS SQQQLDISAA SAAAEKMSTD TDGSSSCSDV 240 TTVLGLSKQN VYRPNMSAIT GSLMEETAAA AAAAAVAGCT TALFPAAVLS SSSALSSTAA 300 DEFHRLLTYQ QASINQQQQY YNDHHNHHHH SQFAALPLQS QPPLALNTLP AAFSDRLWEW 360 NPIPEANNRE YHDPFK

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MVMPGFRFHP TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWFF  60
YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSENSRSI GLKKTLVFYS GKAPKGIRTS  120
WIMNEYRLPQ HETERYQKAE ISLCRVYKRA GVEDHPSLPR ALPTSRASSS RSMSSTSTHS  180
DKKLYPPRQP EAAHHHHYVM ERFQAFGGQS SQQQLDISAA SAAAEKMSTD TDGSSSCSDV  240
TTVLGLSKQN VYRPNMSAIT GSLMEETAAA AAAAAVAGCT TALFPAAVLS SSSALSSTAA  300
DEFHRLLTYQ QASINQQQQY YNDHHNHHHH SQFAALPLQS QPPLALNTLP AAFSDRLWEW  360
NPIPEANNRE YHDPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	4	149	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	4	149	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	4	149	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	4	149	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-55	4	149	19	165	NAC domain-containing protein 19
4dul_B	1e-55	4	149	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577909	4e-59	JX577909.1 Gossypium hirsutum clone NBRI_GE9819 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431380.1	0.0	NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-117	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2H5QU86	0.0	A0A2H5QU86_CITUN; Uncharacterized protein
TrEMBL	V4SZW9	0.0	V4SZW9_9ROSI; Uncharacterized protein
STRING	XP_006431380.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5436	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-111	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]