PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6473_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 388aa MW: 44579.5 Da PI: 9.354

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6473_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.8	5.1e-28	226	280	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+ W+ eLH+ Fv+++++LGG + AtPk+i++lm v+gLt++++kSHLQkYRl Neem_6473_f_4 226 KVRRSWSIELHRLFVDVLNHLGGCQAATPKQIRQLMRVDGLTNDEIKSHLQKYRL 280 679***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.787	223	283	IPR017930	Myb domain
SuperFamily	SSF46689	1.04E-14	224	284	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-25	225	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-22	226	280	IPR006447	Myb domain, plants
Pfam	PF00249	8.0E-6	228	279	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEVNLDLSLV HVPISKSELL RDVSKTKEVS QKVSKLNDYI MRLEEEKQKI GGFKRELPLI 60 MFLVKNAIGK LKKEVMQCTE AQEQPEVIAS KTNTKEGGEV EKINDLSDKR EWTSSFQLWS 120 SDINFDHKRQ DSVSEVQLRR QENNQSVHEN PIELFNCWYR DGAFVPFREQ IGSARSRDNE 180 VSQVPGLSLM MPGLKLDSRE PKKVGRRPKW YARSENNRRQ RRQCRKVRRS WSIELHRLFV 240 DVLNHLGGCQ AATPKQIRQL MRVDGLTNDE IKSHLQKYRL YLHRYENMAA GTEHRPWMPN 300 DQFGDNSSPG TLHCNSPQSP VLSRSGKEIS TTGGTSMGAK EDVRSDGHSW HGKVCIPTEV 360 DVQSQELPMN FAGTRTSFHG NQLINIDI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEVNLDLSLV HVPISKSELL RDVSKTKEVS QKVSKLNDYI MRLEEEKQKI GGFKRELPLI  60
MFLVKNAIGK LKKEVMQCTE AQEQPEVIAS KTNTKEGGEV EKINDLSDKR EWTSSFQLWS  120
SDINFDHKRQ DSVSEVQLRR QENNQSVHEN PIELFNCWYR DGAFVPFREQ IGSARSRDNE  180
VSQVPGLSLM MPGLKLDSRE PKKVGRRPKW YARSENNRRQ RRQCRKVRRS WSIELHRLFV  240
DVLNHLGGCQ AATPKQIRQL MRVDGLTNDE IKSHLQKYRL YLHRYENMAA GTEHRPWMPN  300
DQFGDNSSPG TLHCNSPQSP VLSRSGKEIS TTGGTSMGAK EDVRSDGHSW HGKVCIPTEV  360
DVQSQELPMN FAGTRTSFHG NQLINIDI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P6RN79	2e-86	A0A2P6RN79_ROSCH; Putative transcription factor MYB-HB-like family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-50	G2-like family protein