PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6466_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 334aa    MW: 37514.7 Da    PI: 4.8172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6466_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20175225255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp+      r++lg+f+ta eAa+a+++a+ kl+g
  Neem_6466_f_3 175 HYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTFDTAIEAARAYDRAAFKLRG 225
                    8********.**********8542..4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-32174234IPR001471AP2/ERF domain
CDDcd000181.52E-31174233No hitNo description
SMARTSM003803.6E-37175239IPR001471AP2/ERF domain
PfamPF008475.5E-14175225IPR001471AP2/ERF domain
PROSITE profilePS5103224.605175233IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23175234IPR016177DNA-binding domain
PRINTSPR003671.4E-10176187IPR001471AP2/ERF domain
PRINTSPR003671.4E-10199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATQNVKSAL EFIERQLFGE YPPLPRFNSD FNTNQWINEA QAEVSSSQCS QSSSSDSSLT  60
IQDYSYFNGD GAVFFEFESK PQIVDLVTPK STNPCSQLTD DFFEFDTKPQ IQSRPTNCCS  120
ELESKPKISP NLTSQSTRKR SLKISVPSKP ELRPFSDRSS QPGPESSDIV EEEKHYRGVR  180
RRPWGKYAAE IRDPTRKGSR VWLGTFDTAI EAARAYDRAA FKLRGSKAIV NFPLEAGNYD  240
STTEDSNCET RAETGTCEAK RKRDGENEEE EKIEAKAVKT ECAETVKDIP LTPSTCAAFW  300
DWGWDCDMKG IFNVPPLSPL SPHPPLGFPQ LMVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-29174234161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440235.11e-122ethylene-responsive transcription factor 6
TrEMBLA0A067FCZ11e-121A0A067FCZ1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006440235.11e-122(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.14e-48ethylene responsive element binding factor 6