PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6438_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HSF | ||||||||
Protein Properties | Length: 203aa MW: 23309.1 Da PI: 7.7912 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.7 | 2.5e-35 | 30 | 121 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgFkk+ ++ weF++++F+kg k+ll++i Neem_6438_f_1 30 FLTKTYQLVDDPLTDHIVSWGEDQTTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLLSEI 116 9****************************************************************999.........******************* PP XXXXX CS HSF_DNA-bind 98 krkks 102 +r+ks Neem_6438_f_1 117 HRRKS 121 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-37 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.1E-56 | 26 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.43E-33 | 27 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.0E-31 | 30 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-19 | 30 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-19 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 69 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-19 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MALCSAAAME KSCEEMVFSV DSQKAVPAPF LTKTYQLVDD PLTDHIVSWG EDQTTFVVWR 60 PPEFARDLLP NFFKHNNFSS FVRQLNTYGF KKIVADRWEF ANEYFRKGAK HLLSEIHRRK 120 SPQHNHQNHV KPVSSSFEQR SAATEPTQIR ELGRSSEDDD DGNINGEEQI KSSTVKLFGV 180 PLSGKKRLHP SARKIDDHDH QRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-21 | 26 | 119 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-21 | 26 | 119 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-21 | 26 | 119 | 26 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015583337.1 | 3e-79 | heat stress transcription factor B-4 | ||||
Swissprot | Q7XHZ0 | 1e-65 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | B9T4X0 | 2e-87 | B9T4X0_RICCO; Uncharacterized protein | ||||
STRING | XP_002533289.1 | 4e-88 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2900 | 28 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 4e-64 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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