PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6403_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 294aa MW: 34525.2 Da PI: 6.7628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6403_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.1	1e-24	15	145	1	128
NAM 1 lppGfr..FhPtdeelvveyLkkkvegkkleleevikevdiyk.vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG++ F+Ptd++++ +yL +kv +k+l+ + + e+diy+ +e w+ + +e+ +yfF+k +kk+++g+r +r+tk g+W+++ kd++++ Neem_6403_f_1 15 LPPGCKiiFDPTDQQIILDYLLNKVLHKPLPS-DWVIECDIYSdCEIWKKL-FQERRENTLYFFTKLKKKSERGSRFERVTKCGTWRSQ-KDTKIY 107 68888777*********************9.788999999636777643.234467789**********************87.567777 PP NAM 94 sk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 ++ +++++g +++++f k+ k ++ +W+mhe+rl Neem_6403_f_1 108 CHgrERKHIGSRRSFTFVwKKGVDKDKRVQWIMHEFRL 145 76567778*****96555566689******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-27	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	27.338	17	166	IPR003441	NAC domain
Pfam	PF02365	7.8E-16	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYLVYSQQSA MQAALPPGCK IIFDPTDQQI ILDYLLNKVL HKPLPSDWVI ECDIYSDCEI 60 WKKLFQERRE NTLYFFTKLK KKSERGSRFE RVTKCGTWRS QKDTKIYCHG RERKHIGSRR 120 SFTFVWKKGV DKDKRVQWIM HEFRLDGCLR NNNCSDDYVI CRIKRKEKIK EDDDEEVMAS 180 CSSSDIIRGF QENNMSTVEL SNSVWNTARR FQNVVPTEVA NIGINGEGLL YSEEIHHSNL 240 CLSLKDLQDD YYEVDKFLLP NAQVERPVNI VEVQSNTTPA DWKTSEDLEK ILLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-17	12	167	14	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-17	12	167	14	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-17	12	167	14	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-17	12	167	14	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-17	12	167	17	169	NAC domain-containing protein 19
3swm_B	5e-17	12	167	17	169	NAC domain-containing protein 19
3swm_C	5e-17	12	167	17	169	NAC domain-containing protein 19
3swm_D	5e-17	12	167	17	169	NAC domain-containing protein 19
3swp_A	5e-17	12	167	17	169	NAC domain-containing protein 19
3swp_B	5e-17	12	167	17	169	NAC domain-containing protein 19
3swp_C	5e-17	12	167	17	169	NAC domain-containing protein 19
3swp_D	5e-17	12	167	17	169	NAC domain-containing protein 19
4dul_A	4e-17	12	167	14	166	NAC domain-containing protein 19
4dul_B	4e-17	12	167	14	166	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20060	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	2e-18	NAC domain containing protein 80