PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6387_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 335aa    MW: 37232.8 Da    PI: 7.4987
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6387_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind842.1e-262598275
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
   HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Yg k +  e +++k+ 
  Neem_6387_f_5 25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGEKHLLCEIHRRKTA 98
                   9***********************************************************87765555444442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-281788IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-332195IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-242295IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.0E-172548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2225107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-177688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGEKHLLC EIHRRKTAQP QVAVNHHHHH QHPHSALVNG  120
PSFFPFPNRV SISPSDSDEQ ANWSDSPPRG GTGVSVTGAG GGGYNSSVTA LSEDNERLRR  180
SNNMLMSELA HMRKLYNDII YFVQNHVKPV TPSNSYPSSL LLCNNTQSAT HIGANTPLVQ  240
KPLSQLLGYY PPNPKQPPQT HVLNSPTTTS QSSLTILEEP NNNSCKTRLF GVPLQSKKRL  300
HPEYASSPGN TETNKARLVL EKDDLGLNLM PPSAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-1620892593Heat shock factor protein 1
5d5v_B6e-1620892593Heat shock factor protein 1
5d5v_D6e-1620892593Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434743.10.0heat stress transcription factor B-4
SwissprotQ9C6359e-96HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLV4SJS50.0V4SJS5_9ROSI; Uncharacterized protein
STRINGXP_006434743.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-93heat shock transcription factor B4